Class Hierarchy
Go to the graphical class hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:

Alleles

AnalyzeClass

BamIndex

bamRecordStruct

BaseAsciiMap

BaseComposition

BaseCount

baseQualityConvertor

BaseUtilities

BasicHash

CharBuffer

ChromosomeInfo

Chunk

Cigar

Cigar::CigarOperator

CigarRollerTest

ColumnExtras

defaultPileup< PILEUP_TYPE >

ErrorHandler

Family

FastQ

FastQFile

FastQStatus

FileType

FortranFormat

GenericSamInterface

GenotypeList

glfEntry

GlfException

GlfFile

glfHandler

GlfHeader

glfIndel

GlfRecord

GlfRefSection

GlfStatus

GlobalTestEnvironment

GreedyTupleAligner< QueryType, ReferenceType, ReferenceIndex >

GzipHeader

InputFile

IntArray

IntHash

LongHash< ObjectT >

LongHash< int >

LongParameterList

MarkerInfo

Matrix

MemoryMap

MemoryMapArrayHeader

MemoryMapGenericHeader

MiniDeflate

MockGenomeSequence

modify

modifyVar

OptionList

PackedRead

Parameter

ParameterList

PedigreeGlobals

PedigreeKey

Pileup< PILEUP_TYPE, FUNC_CLASS >

PileupElement

Random

ReadBase

ReadInsertion

RunningStat

SamFile

SamFileHeader

SamFilter

SamFlag

SamHeaderRecord

SamHeaderTag

SamQuerySeqWithRefIter

SamRecord

SamReferenceInfo

SamSingleBaseMatchInfo

SamStatistics

SamStatus

SamValidationError

SamValidationErrors

SamValidator

SequenceCoverageReader

SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >

SortedChunkList

String

StringArray

StringDoubleHash

StringHash

StringIntHash

StringIntMap

StringMap

TestWrite

Vector

VectorFunc

SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight

Weight