clipOnMismatchThreshold(SamRecord &record, GenomeSequence &refSequence, double mismatchThreshold) (defined in SamFilter) | SamFilter | [static] |
CLIPPED enum value (defined in SamFilter) | SamFilter | |
FILTERED enum value (defined in SamFilter) | SamFilter | |
filterOnMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint32_t qualityThreshold, uint8_t defaultQualityInt) (defined in SamFilter) | SamFilter | [static] |
filterRead(SamRecord &record) (defined in SamFilter) | SamFilter | [static] |
FilterStatus enum name (defined in SamFilter) | SamFilter | |
NONE enum value (defined in SamFilter) | SamFilter | |
sumMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint8_t defaultQualityInt) (defined in SamFilter) | SamFilter | [static] |