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, 22:48, 10 February 2011
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| | <code>--states 200</code> | | | <code>--states 200</code> |
− | | Number of haplotypes to consider during each update. Increasing this value will typically lead to better haplotypes, but can dramatically increase computing time and memory use. A value of 100 - 400 is typical. | + | | Number of haplotypes to consider during each update. Increasing this value will typically lead to better haplotypes, but can dramatically increase computing time and memory use. A value of 200 - 400 is typical. |
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| | <code>--rounds 20</code> | | | <code>--rounds 20</code> |
− | | Iterations of the Markov sampler to use for haplotyping. Typically, using 20 - 100 rounds should give good results. To obtain better results, it is usually better to increase the <code>--states</code> parameter. | + | | Iterations of the Markov sampler to use for haplotyping. Typically, using 20 - 30 rounds should give good results. To obtain better results, it is usually better to increase the <code>--states</code> parameter. |
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| | <code>--interim 5</code> | | | <code>--interim 5</code> |