1,555
edits
Changes
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|-
| 200 states
| 200 states
| 12 min = (3 min * 2^2)
| 12 min = (3 min * 2<sup>2</sup>)
|-
|-
| 400 states
| 400 states
| 48 min = (3 min * 4^2)
| 48 min = (3 min * 4<sup>2</sup>)
|-
|-
| 500 states
| 500 states
| 75 min = (3 min * 5^2)
| 75 min = (3 min * 5<sup>2</sup>)
|}
|}
So, in this case running haplotyping with 500 states and 10 rounds would require 75 min * 10 = 750 min.
So, in this case running haplotyping with 500 states and 10 rounds would require 75 min * 10 = 750 min.
Typically, haplotype quality improves rapidly with the number of states but only slowly with the number of rounds. We recommend running ~20 rounds of the MaCH haplotyper and selecting a number of states as high as your patience will allow.
Typically, haplotype quality improves rapidly with the number of states but only slowly with the number of rounds. We recommend running ~20 rounds of the MaCH haplotyper and selecting a number of states as high as your patience will allow (but ideally greater than 200).
== Imputation ==
== Imputation ==
