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#* Contains the reference base for each position of each chromosome
 
#* Contains the reference base for each position of each chromosome
 
#** Used to compare bases in sequence reads to the reference positions they mapped to
 
#** Used to compare bases in sequence reads to the reference positions they mapped to
#** Identify SNPs
+
#** Used to identify SNPs/variations in the sequence reads
 
#* Additional information on the FASTA format: http://en.wikipedia.org/wiki/FASTA_format
 
#* Additional information on the FASTA format: http://en.wikipedia.org/wiki/FASTA_format
 
# VCF (variant call format) files with chromosomes/positions
 
# VCF (variant call format) files with chromosomes/positions

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