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Jump to navigationJump to searchEvaluating a Read Mapper on Simulated Data (view source)
Revision as of 18:33, 8 February 2010
, 18:33, 8 February 2010→Available Test Datasets
indelXX: Insert a random XX-length piece for a single read, or at the same position for a paired reads
indelXX: Insert a random XX-length piece for a single read, or at the same position for a paired reads
delXX: Delete a random XX-length piece for a single read, or at the same position for a paired reads
delXX: Delete a random XX-length piece for a single read, or at the same position for a paired reads
e.g. ./generator bs se exact -n 100 -l 35
* Output
* Output
Simulation file are named like: BS_SE_EXACT_1000000_35, meaning base space, single end, exact (no polymorphism), 1M reads, 35 bp per read.
Simulation file are named like: BS_SE_EXACT_1000000_35, meaning base space, single end, exact (no polymorphism), 1M reads, 35 bp per read.
For each read, the tag was named in a similar way to Sanger's.
For each read, the tag was named in a similar way to Sanger's.
