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Jump to navigationJump to searchTutorial: EMMAX GotCloud STOM: Lecture 5 (view source)
Revision as of 03:31, 6 January 2014
, 03:31, 6 January 2014→Preparing Input Files
* Configuration File - See the example configuration file below.
* Configuration File - See the example configuration file below.
% cat $S5/examples/index/chr7.CFTR.align.conf�
% cat $S5/examples/index/chr7.CFTR.align.conf
INDEX_FILE = index/chr7.CFTR.fastq.index
###################
###################
# References
# References
Default options should be mostly fine in many other cases. In this example, because it is not genome-wide calling, reference files are modified to be chr7-specific
Default options should be mostly fine in many other cases. In this example, because it is not genome-wide calling, reference files are modified to be chr7-specific
=== Run GotCloud Alignment Pipeline ===
=== Run GotCloud Alignment Pipeline ===
