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| − | = Pedigree File =
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| − | vt understands an augmented version introduced by [hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink].
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| − | The pedigree file format is as follows with the following mandatory fields:
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| − | {| class="wikitable"
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| − | |-
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| − | ! scope="col"| Field
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| − | ! scope="col"| Description
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| − | ! scope="col"| Valid Values
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| − | |-
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| − | |Family ID<br>
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| − | Individual ID<br>
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| − | Paternal ID<br>
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| − | Maternal ID<br>
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| − | Sex<br>
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| − | Phenotype
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| − | |ID of this family <br>
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| − | ID of this individual <br>
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| − | ID of the father <br>
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| − | ID of the mother <br>
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| − | Sex of the individual. <br>
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| − | Phenotype.
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| − | |[A-Za-z_]+<br>
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| − | [A-Za-z_]+ <br>
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| − | [A-Za-z_]+ <br>
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| − | [A-Za-z_]+<br>
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| − | 1 = male, 2 = female and other = alternative<br>
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| − | [A-Za-z_]+
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| − | |}
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| − | Family ID
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| − | Individual ID
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| − | Paternal ID
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| − | Maternal ID
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| − | Sex (1=male; 2=female; other=unknown)
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| − | Phenotype
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| − | ceu NA12878 NA12891 NA12892 female
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| − | yri NA19240 NA19239 NA19238 female
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| − |
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| − | ceu NA12878,NA12878A NA12891 NA12892 female
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| − | yri NA19240 NA19239 NA19238 female
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| − | ceu NA12878,NA12878A NA12891 NA12892 0
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| − | yri NA19240 NA19239 NA19238 0
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| | = Variant Calling = | | = Variant Calling = |
