User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 14:47, 4 October 2011 diff hist +229 BamUtil: convert →BAM File Recovery: better grammar and more text
- 14:44, 4 October 2011 diff hist +1,047 BamUtil: convert add recovery section
- 14:32, 4 October 2011 diff hist +60 m BamUtil: convert →Parameters: add recover option
- 16:33, 2 November 2010 diff hist +7,682 N QPLOT initial copy from internal wiki - needs more edits
- 13:40, 30 July 2010 diff hist +64 m SAM →What is SAM: second test
- 13:38, 30 July 2010 diff hist +59 m SAM →What is SAM: test edit - revert
- 13:30, 30 July 2010 diff hist +136 SAM →What is SAM: refer to BamFile c++ library code
- 13:28, 30 July 2010 diff hist +477 BAM elaborate on details
- 16:30, 29 July 2010 diff hist +257 SAM →What is SAM: simplify and elaborate
- 13:06, 16 July 2010 diff hist +4 m BamGenotypeCheck fix indenting
- 13:05, 16 July 2010 diff hist +453 BamGenotypeCheck add pointer to fresh karma download
- 10:57, 22 June 2010 diff hist -2 m BamGenotypeCheck →Input Files: fix link
- 10:56, 22 June 2010 diff hist +60 BamGenotypeCheck →Input Files: add fasta link
- 10:54, 22 June 2010 diff hist +21 BamGenotypeCheck →Input Files: more detail
- 10:53, 22 June 2010 diff hist +81 BamGenotypeCheck →Filtering: add -f option
- 10:48, 22 June 2010 diff hist +1 m Main Page →Sequence Analysis Tools: change name
- 10:47, 22 June 2010 diff hist +4 BamGenotypeCheck rename again
- 10:46, 22 June 2010 diff hist +30 N GenotypeIDcheck moved GenotypeIDcheck to BamGenotypeCheck: a better name was suggested current
- 10:46, 22 June 2010 diff hist 0 m BamGenotypeCheck moved GenotypeIDcheck to BamGenotypeCheck: a better name was suggested
- 11:19, 21 June 2010 diff hist +18 m Software change layout a little
- 11:06, 21 June 2010 diff hist +488 BamGenotypeCheck total rewrite - new program
- 10:23, 21 June 2010 diff hist -1 m Main Page rename BAMidentity check to genotypeIDcheck to match new program name
- 10:22, 21 June 2010 diff hist +29 N BamIdentityCheck moved BamIdentityCheck to GenotypeIDcheck: now matches the new program name current
- 10:22, 21 June 2010 diff hist 0 m BamGenotypeCheck moved BamIdentityCheck to GenotypeIDcheck: now matches the new program name
- 09:49, 8 June 2010 diff hist +27 m BAM Review Action Items add new name options, spelling corrections
- 14:18, 20 April 2010 diff hist +88 Verifying Sample Identities - Implementation →Mathematical Details
- 16:37, 13 April 2010 diff hist +320 C++ Class: Pedigree Example →Example current
- 16:35, 13 April 2010 diff hist +532 C++ Class: Pedigree Example →Example
- 16:31, 13 April 2010 diff hist +1 C++ Class: Pedigree Example →Example
- 16:31, 13 April 2010 diff hist +1,000 N C++ Class: Pedigree Example Created page with '== Example == <source lang="cpp"> #include "Pedigree.h" int main(int argc, char ** argv); { Pedigree ped; // The data file contains a description of the contents of the…'
- 16:24, 13 April 2010 diff hist +200 Verifying Sample Identities - Implementation →Mathematical Details
- 16:20, 13 April 2010 diff hist +574 Verifying Sample Identities - Implementation →Mathematical Details
- 16:09, 13 April 2010 diff hist +79 Verifying Sample Identities - Implementation →Mathematical Details
- 16:03, 13 April 2010 diff hist +1,786 Verifying Sample Identities - Implementation →Mathematical Details
- 15:52, 13 April 2010 diff hist +233 Verifying Sample Identities - Implementation →Mathematical Details
- 15:49, 13 April 2010 diff hist -8 Verifying Sample Identities - Implementation →Mathematical Details
- 15:49, 13 April 2010 diff hist +78 Verifying Sample Identities - Implementation
- 15:47, 13 April 2010 diff hist +1,533 N Verifying Sample Identities - Implementation Created page with '== Principle == We should be able to verify that the right sample has been sequenced by comparing base calls in a read to known genotypes for a sample. If the sample has been s…'
- 10:30, 9 April 2010 diff hist +402 Karma →Karma CHANGELOG: fill in 0.9.0 changes
- 10:01, 9 April 2010 diff hist +478 Karma add TODO items and begin listing change history
- 15:22, 8 April 2010 diff hist +372 Karma add features/benefits
- 15:13, 8 April 2010 diff hist +1 Karma →Other useful links
- 15:13, 8 April 2010 diff hist +70 Karma →Karma Performance Tuning
- 15:11, 8 April 2010 diff hist +477 Karma fill in build info
- 15:05, 8 April 2010 diff hist +166 Karma →Dependencies: fill em in
- 15:03, 8 April 2010 diff hist +3,588 Karma fill in performance details
- 14:36, 8 April 2010 diff hist -169 Karma add mapping examples
- 14:25, 8 April 2010 diff hist +930 Karma populate alignment section
- 14:07, 8 April 2010 diff hist +84 m Karma →Testing the build: more detail
- 14:07, 8 April 2010 diff hist +493 Karma →Testing the build: flesh it out