Changes

: This option allows you to plot results for all markers within a specific distance (e.g. 500kb) of an index SNP. To use this option, set column 1 to have the name of the index SNP (e.g. ''rs2'' below) and set column 5 to specify the width of the region of interest (e.g. 500kb below). Here is an example:

: This option allows you to plot results for all markers within a specific distance (e.g. 500kb) of an index SNP. To use this option, set column 1 to have the name of the index SNP (e.g. ''rs2'' below) and set column 5 to specify the width of the region of interest (e.g. 500kb below). Here is an example:

<code lang="text">

<quote>

Feature    chr    start    end      flank        plot    arguments

Feature    chr    start    end      flank        plot    arguments

rs1     na     na       na      500kb        yes      rfrows=3 weightCol=”N” snpset=”HapMap” metalRug=”Our SNPs”  

rs1     na     na       na      500kb        yes      rfrows=3 weightCol=”N” snpset=”HapMap” metalRug=”Our SNPs”  

</code>

</quote>

; Plotting a region flanking an interesting SNP

; Plotting a region flanking an interesting SNP