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, 14:28, 31 May 2017
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| − | For the latest stable LocusZoom package, see our [https://statgen.sph.umich.edu/locuszoom/download/ download] page. The current version is '''1.3''', released on June 20th, 2014. | + | For the latest stable LocusZoom package, see our [https://github.com/statgen/locuszoom-standalone download] page. The current version is '''1.3''', released on June 20th, 2014. |
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| | Currently only '''Unix/Linux''' is supported, though Mac OS X should be supported in a future release. Support for Windows may come at a much later date. | | Currently only '''Unix/Linux''' is supported, though Mac OS X should be supported in a future release. Support for Windows may come at a much later date. |
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| | == Download == | | == Download == |
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| − | See our [https://statgen.sph.umich.edu/locuszoom/download/ download] page for links to the latest as well as previous releases. | + | See our [https://github.com/statgen/locuszoom-standalone download] page for links to the latest as well as previous releases. |
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| − | == Changes in Version 1.3 ==
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| − | New features:
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| − | * Database and GWAS catalog files updated for hg19
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| − | * [[#Plotting BED tracks| Adding BED tracks]]
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| − | * [[#Updating the existing locuszoom database(s)| Update locuszoom's database without waiting for a release]]
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| − | * [[#Specify gene table (refFlat, GENCODE, etc.) | Use different gene information tables + GENCODE support]]
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| − | * [[#EPACTS formatted file|Support for tabix indexed EPACTS files]]
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| − | * [[#Reading from STDIN| Read data from STDIN]]
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| − | * [[#Plotting options| New plotting options for color, significance lines]]
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| − | * [[#Supply VCF files for calculating LD|Provide multiple chromosome separated VCF files for calculating LD]]
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| − | The full changelog is available on the [https://statgen.sph.umich.edu/locuszoom/download/ download] site.
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| − | == Changes in Version 1.2 ==
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| − | A number of new features have been added for this version. See the following sections for more info:
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| − | * [[#EPACTS formatted file|Loading EPACTS results]]
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| − | * [[#Plotting LD with additional reference SNPs|Plotting LD with additional reference SNPs]]
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| − | * [[#Labeling multiple SNPs|Labeling multiple SNPs]]
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| − | * [[#Fine-mapping credible sets|Fine-mapping credible sets]]
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| − | * [[#GWAS catalog variants|GWAS catalog variants]]
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| − | * [[#Supply VCF files for calculating LD|Supply VCF files for calculating LD]]
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| − | The full changelog is available on the [https://statgen.sph.umich.edu/locuszoom/download/ download] site.
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| | == Installation == | | == Installation == |
