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# Variant Calling with [[glfSingle]], [[glfTrio]] and [[glfMultiples]]
# Variant Calling with [[glfSingle]], [[glfTrio]] and [[glfMultiples]]
# Variant Annotations using [[vcfCodingSnps]]
# Variant Annotations using [[vcfCodingSnps]]
# Rare Variant analysis using [[rvTests]]
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]]
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]]
# File Readers using [[C++ Library: libbam|BamFile]] and [[C++ Library: libfqf|FastQFile]]
# File Readers using [[C++ Library: libbam|BamFile]] and [[C++ Library: libfqf|FastQFile]]
