62
edits
Changes
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|-
|-
| start
| start
| Start position to plot.
| Start position to display on plot.
|-
|-
| stop
| end
| Stop position.
| End position to display on plot.
|-
|-
| flank
| flank
The second row would plot 1.25 MB on either side of TCF7L2's transcription start and stop. The SNP with the most significant p-value in your <code>--metal</code> file will be used as the reference SNP. The plot title would read "TCF7L2 Region", and the recombination overlay would be disabled using showRecomb=F.
The second row would plot 1.25 MB on either side of TCF7L2's transcription start and stop. The SNP with the most significant p-value in your <code>--metal</code> file will be used as the reference SNP. The plot title would read "TCF7L2 Region", and the recombination overlay would be disabled using showRecomb=F.
The third row would plot rs7957197 as the reference SNP, but here we've specifically designated the region to plot, which is chr12:119503590-120322280. We've also disabled showing SNP annotations with showAnnot=F.
The third row would plot rs7957197 as the reference SNP, but here we've specifically designated the region to plot, which is chr12:119503590-120322280. We've also disabled showing SNP annotations with showAnnot=F.
=== User-supplied LD ===
=== User-supplied LD ===
