Changes

From Genome Analysis Wiki
Jump to navigationJump to search
Line 62: Line 62:  
You may need administrator rights to install this program.
 
You may need administrator rights to install this program.
   −
=== Step 4: Install LocusZoom  ===
+
=== Step 4: Install PLINK ===
 +
 
 +
PLINK is now used to calculate LD for all future LD sources / populations that we may add. The program new_fugue (above) is used to calculate LD from older sources (such as hapmap) and older builds (such as hg18) where LD files are sufficiently small.
 +
 
 +
You can download PLINK and find instructions for installing it [http://pngu.mgh.harvard.edu/~purcell/plink/download.shtml here].
 +
 
 +
=== Step 5: Install LocusZoom  ===
    
LocusZoom is provided as a tar archive which contains the following:  
 
LocusZoom is provided as a tar archive which contains the following:  
239

edits

Navigation menu