Genome Analysis Wiki - User contributions [en]

Biostatistics 830: Main Page

2013-09-10T17:54:15Z

Ljbaker: /* Scheduling */

== Objective ==

Gene mapping studies study the relationship between genetic variation and susceptibility to human disease. These studies are changing rapidly with the availability of techniques for very large scale genetic analysis, whether based on sequencing or on genotyping. Biostatistics 830 is a Ph.D. level course that dissects some recently developed methods and the principles behind their implementation. It is meant to provide students with a toolkit to facilitate development and implementation of new statistical methods.

For additional information, see also [[Biostatistics 830: Core Competencies|Core Competencies in Biostatistics Program covered by this course]].

== Target Audience ==

It is highly recommended that students registering for Biostatistics 830 should have previously completed [[Biostatistics 666]] and [[Biostatistics 615/815]], which are courses introducing methods for genetic analysis and programming principles, respectively.

== Scheduling ==

For Fall 2013, classes are scheduled for Wednesdays and Fridays, 3:00 - 4:30 pm room M4318 SPH II.

The final grade will take into account your performance in problem sets and worksheets as well as your participation in class.

== Standards of Academic Conduct ==

The following is an extract from the School of Public Health's Student Code of Conduct [http://www.sph.umich.edu/academics/policies/conduct.html]:

''Student academic misconduct includes behavior involving plagiarism, cheating, fabrication, falsification of records or official documents, intentional misuse of equipment or materials, and aiding and abetting the perpetration of such acts. The preparation of reports, papers, and examinations, assigned on an individual basis, must represent each student’s own effort. Reference sources should be indicated clearly. The use of assistance from other students or aids of any kind during a written examination, except when the use of books or notes has been approved by an instructor, is a violation of the standard of academic conduct.''

In the context of this course, any work you hand-in should be your own and any material that is a transcript (or interpreted transcript) of work by others must be clearly labeled as such.

== Required Reading ==

* Albers CA, Lunter G, MacArthur DG, McVean G, Ouwehand WH, Durbin R (2010) Dindel: accurate indel calls from short-read data. Genome Res. 21:961-73

* Browning SR, Browning BL (2007) Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. ''Am J Hum Genet.'' '''81''':1084-97. PMID: 17924348

* Coventry A, Bull-Otterson LM, Liu X, Clark AG, Maxwell TJ, Crosby J, Hixson JE, Rea TJ, Muzny DM, Lewis LR, Wheeler DA, Sabo A, Lusk C, Weiss KG, Akbar H, Cree A, Hawes AC, Newsham I, Varghese RT, Villasana D, Gross S, Joshi V, Santibanez J, Morgan M, Chang K, Iv WH, Templeton AR, Boerwinkle E, Gibbs R, Sing CF (2010) Deep resequencing reveals excess rare recent variants consistent with explosive population growth. ''Nat Commun.'' '''1''':131. PMID: 21119644

* Delaneau O, Zagury JF, Marchini J (2013) Improved whole-chromosome phasing for disease and population genetic studies. ''Nat Methods.'' '''10''':5-6. PMID: 23269371

* Howie B, Fuchsberger C, Stephens M, Marchini J, Abecasis GR (2012) Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. ''Nat Genet.'' '''44''':955-9. PMID: 22820512

* Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. ''Nat Genet.'' '''44''':226-32. PMID: 22231483

* Jun G, Flickinger M, Hetrick KN, Romm JM, Doheny KF, Abecasis GR, Boehnke M, Kang HM (2012) Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data. ''Am J Hum Genet.'' '''91''':839-48. PMID: 23103226

* Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. ''Genome Res.'' '''18''':1851-8. PMID: 18714091

* Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. ''Bioinformatics.'' '''25''':1754-60. PMID: 19451168

* Li H, Durbin R (2011) Inference of human population history from individual whole-genome sequences. ''Nature.'' '''475''':493-6. PMID: 21753753

* Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. ''Genet Epidemiol.'' '''34''':816-34. PMID: 21058334

* Lin DY, Zeng D (2010) Meta-analysis of genome-wide association studies: no efficiency gain in using individual participant data. ''Genet Epidemiol.'' '''34''':60-6. PMID: 19847795

* Liu et al (2013) http://arxiv.org/abs/1305.1318

* Wen X, Stephens M (2010) Using linear predictors to impute allele frequencies from summary or pooled genotype data. ''Ann Appl Stat.'' '''4''':1158-1182. PMID: 21479081

* Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X (2011) Rare-variant association testing for sequencing data with the sequence kernel association test. Am J Hum Genet. 89:82-93

* Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. ''Genome Res.'' '''18''':821-9. PMID: 18349386

== Course History ==

This course is an ad-hoc course, first taught by Goncalo Abecasis in the Fall of 2013.

SardiNIA project meeting July 15-16, 2013

2013-07-08T15:46:17Z

Ljbaker: /* Travel Logistics */

=Travel Logistics=

Meeting room is W0768 Wyly Hall. Ross School of Business, 710 E. University Av., Ann Arbor, MI 48109.

Please enter through the hotel entrance. Elevators are to the left of the hotel front desk. Take elevator to the 1st floor. W0768 is on the right.

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see [http://www.metroairport.com/ Fly into DTW]

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/ AirRide] 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

:[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

:[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

:[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

:[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

:[http://www.umich.edu/~info/aamap.html] Map of Routes to Downtown Ann Arbor

:[http://www.a2dda.org/downloads/walkmap0408.pdf] Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's [http://www.a2dda.org/downloads/Parking/ForestAve.pdf Forest Avenue public parking structure], located three blocks east and one block north of the Ross School. No permit is required for this structure.

[http://www.a2dda.org/parking__transportation/parking_options/ City of Ann Arbor Parking]

[http://www.a2dda.org/downloads/walkmap0408.pdf Map of Downtown Ann Arbor Parking]

Campus Parking

:[http://pts.umich.edu/patient_visitor/visitor.php UM Visitor Parking Information]

:[http://pts.umich.edu/maps/central_south.pdf Map of UM Visitor Parking]

==Hotels==

[http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

[http://www.belltowerhotel.com/ Bell Tower Hotel] 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

[http://uunions.umich.edu/league/inn/ Inn at the Michigan League] 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

[https://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 The Executive Learning and Conference Center] 734-764-7677

$155/night +tax

Book your room by clicking [http://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 here]

710 East University Dr., Ann Arbor, MI 48109

[http://www.annarborregent.com/ Ann Arbor Regent Hotel & Suites]

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click [http://www.visitannarbor.org/index.php/place_to_stay/ here]

SardiNIA project meeting July 15-16, 2013

2013-05-06T18:07:26Z

Ljbaker: /* Driving Directions */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see [http://www.metroairport.com/ Fly into DTW]

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/ AirRide] 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

:[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

:[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

:[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

:[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

:[http://www.umich.edu/~info/aamap.html] Map of Routes to Downtown Ann Arbor

:[http://www.a2dda.org/downloads/walkmap0408.pdf] Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's [http://www.a2dda.org/downloads/Parking/ForestAve.pdf Forest Avenue public parking structure], located three blocks east and one block north of the Ross School. No permit is required for this structure.

[http://www.a2dda.org/parking__transportation/parking_options/ City of Ann Arbor Parking]

[http://www.a2dda.org/downloads/walkmap0408.pdf Map of Downtown Ann Arbor Parking]

Campus Parking

:[http://pts.umich.edu/patient_visitor/visitor.php UM Visitor Parking Information]

:[http://pts.umich.edu/maps/central_south.pdf Map of UM Visitor Parking]

==Hotels==

[http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

[http://www.belltowerhotel.com/ Bell Tower Hotel] 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

[http://uunions.umich.edu/league/inn/ Inn at the Michigan League] 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

[https://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 The Executive Learning and Conference Center] 734-764-7677

$155/night +tax

Book your room by clicking [http://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 here]

710 East University Dr., Ann Arbor, MI 48109

[http://www.annarborregent.com/ Ann Arbor Regent Hotel & Suites]

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click [http://www.visitannarbor.org/index.php/place_to_stay/ here]

SardiNIA project meeting July 15-16, 2013

2013-05-06T18:04:47Z

Ljbaker: /* Ground Transportation */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see [http://www.metroairport.com/ Fly into DTW]

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/ AirRide] 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

:[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

:[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

:[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

:[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

:[http://www.umich.edu/~info/aamap.html] Map of Routes to Downtown Ann Arbor

:[http://www.a2dda.org/downloads/walkmap0408.pdf] Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

[http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

[http://www.belltowerhotel.com/ Bell Tower Hotel] 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

[http://uunions.umich.edu/league/inn/ Inn at the Michigan League] 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

[https://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 The Executive Learning and Conference Center] 734-764-7677

$155/night +tax

Book your room by clicking [http://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 here]

710 East University Dr., Ann Arbor, MI 48109

[http://www.annarborregent.com/ Ann Arbor Regent Hotel & Suites]

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click [http://www.visitannarbor.org/index.php/place_to_stay/ here]

SardiNIA project meeting July 15-16, 2013

2013-05-06T18:04:17Z

Ljbaker: /* Air Transportation */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see [http://www.metroairport.com/ Fly into DTW]

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

:[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

:[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

:[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

:[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

:[http://www.umich.edu/~info/aamap.html] Map of Routes to Downtown Ann Arbor

:[http://www.a2dda.org/downloads/walkmap0408.pdf] Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

[http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

[http://www.belltowerhotel.com/ Bell Tower Hotel] 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

[http://uunions.umich.edu/league/inn/ Inn at the Michigan League] 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

[https://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 The Executive Learning and Conference Center] 734-764-7677

$155/night +tax

Book your room by clicking [http://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 here]

710 East University Dr., Ann Arbor, MI 48109

[http://www.annarborregent.com/ Ann Arbor Regent Hotel & Suites]

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click [http://www.visitannarbor.org/index.php/place_to_stay/ here]

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:54:09Z

Ljbaker: /* Driving Directions */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

:[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

:[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

:[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

:[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

:[http://www.umich.edu/~info/aamap.html] Map of Routes to Downtown Ann Arbor

:[http://www.a2dda.org/downloads/walkmap0408.pdf] Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

[http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

[http://www.belltowerhotel.com/ Bell Tower Hotel] 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

[http://uunions.umich.edu/league/inn/ Inn at the Michigan League] 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

[https://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 The Executive Learning and Conference Center] 734-764-7677

$155/night +tax

Book your room by clicking [http://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 here]

710 East University Dr., Ann Arbor, MI 48109

[http://www.annarborregent.com/ Ann Arbor Regent Hotel & Suites]

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click [http://www.visitannarbor.org/index.php/place_to_stay/ here]

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:52:18Z

Ljbaker: /* Hotels */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

[http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

[http://www.belltowerhotel.com/ Bell Tower Hotel] 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

[http://uunions.umich.edu/league/inn/ Inn at the Michigan League] 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

[https://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 The Executive Learning and Conference Center] 734-764-7677

$155/night +tax

Book your room by clicking [http://booking.ihotelier.com/istay/istay.jsp?groupID=765638&hotelID=76008 here]

710 East University Dr., Ann Arbor, MI 48109

[http://www.annarborregent.com/ Ann Arbor Regent Hotel & Suites]

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click [http://www.visitannarbor.org/index.php/place_to_stay/ here]

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:49:21Z

Ljbaker: /* Hotels */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

[http://www.campusinn.com/Campus Inn] 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:48:45Z

Ljbaker: /* Driving Directions */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

[http://www.bus.umich.edu/VisitUs/MapsDirections.html] Directions to the Ross Campus

[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:47:44Z

Ljbaker: /* Driving Directions */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business, 701 Tappan St., Ann Arbor, MI 48109

[http://www.bus.umich.edu/VisitUs/MapsDirections.htm]Directions to the Ross Campus

[http://www.bus.umich.edu/VisitUs/umbs_directory_final.pdf] Map of the Ross Campus

To Central Campus

[http://www.umich.edu/~info/mapsAndDirections.html] Directions to Central Campus

[http://www.umich.edu/~info/central.html] Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:45:44Z

Ljbaker: /* Ground Transportation */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/ TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business

Directions to the Ross Campus

Map of the Ross Campus

To Central Campus

Directions to Central Campus

Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:45:13Z

Ljbaker: /* Ground Transportation */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

[http://annarbortaxitransport.4t.com/Ann Arbor Cab] 734-272-8009 (local service)

[http://www.bluecab.net/Ann Arbor Blue Cab] - 734-547-2222

[http://myairride.com/AirRide} 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

[http://www.theride.org/TheRide] 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business

Directions to the Ross Campus

Map of the Ross Campus

To Central Campus

Directions to Central Campus

Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:37:09Z

Ljbaker: /* Ground Transportation */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

:$60 one way from DTW to AA. Book online and use Promo Code: UM814061

:Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

:$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

:$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

Ann Arbor Cab 734-272-8009 (local service)

Ann Arbor Blue Cab - 734-547-2222

AirRide 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

TheRide 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business

Directions to the Ross Campus

Map of the Ross Campus

To Central Campus

Directions to Central Campus

Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:36:29Z

Ljbaker: /* Ground Transportation */

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

$60 one way from DTW to AA. Book online and use Promo Code: UM814061

Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

$52 one way from DTW to AA.

[http://www.amazingbluetaxi.com/Amazing Blue Taxi] 734-846-0007 (requires 24 hr. advance reservations)

$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

Ann Arbor Cab 734-272-8009 (local service)

Ann Arbor Blue Cab - 734-547-2222

AirRide 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

TheRide 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business

Directions to the Ross Campus

Map of the Ross Campus

To Central Campus

Directions to Central Campus

Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

SardiNIA project meeting July 15-16, 2013

2013-05-06T17:34:17Z

Ljbaker: Created page with '=Travel Logistics= ==Air Transportation== The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on t…'

=Travel Logistics=

==Air Transportation==

The closest airport to Ann Arbor (AA) is the Detroit Metro Airport, which is a 30 minute drive to Ann Arbor. For more information on the Detroit Metro Airport, see Fly into DTW.

==Ground Transportation==

[https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701

$60 one way from DTW to AA. Book online and use Promo Code: UM814061

Luxury Sedan, Chrysler 300M

[http://www.metroairporttaxi.org/reservations.htm Metro Airport Taxi] 1-800-745-5191

$52 one way from DTW to AA.

Amazing Blue Taxi 734-846-0007 (requires 24 hr. advance reservations)

$60 DTW to AA. $50 AA to DTW. Mention that you would like to receive the UM discount.

Ann Arbor Cab 734-272-8009 (local service)

Ann Arbor Blue Cab - 734-547-2222

AirRide 734-707-7247

Bus service from DTW to Ann Arbor Central Campus Transit Center. $12 one way with registration.

TheRide 734-996-0400

The Ann Arbor Transit Authority (AATA) operates the local public transit system for the greater Ann Arbor area. AATA buses will stop to pick up or drop off passengers only at designated blue, white and red AATA bus stop signs. Most routes in Ann Arbor originate at the Blake Transit Center (on Fourth Avenue between William and Liberty) at 15 minutes after and 15 minutes before each hour.

AATA operates Park and Ride lots as an alternative to parking in downtown Ann Arbor. Visitors may park free all day at a Park and Ride lot and just pay the bus fare to ride the bus downtown and back.

For Park and Ride locations, route and other information, contact the AATA via the phone number or website above.

==Driving Directions==

To the Ross School of Business

Directions to the Ross Campus

Map of the Ross Campus

To Central Campus

Directions to Central Campus

Map of Central Campus

To Downtown Ann Arbor

Map of Routes to Downtown Ann Arbor

Map of Downtown Ann Arbor

Parking Structures and Lots

Parking Near the Ross School

Visitor parking is available via metered parking on the street or in the City of Ann Arbor's Forest Avenue public parking structure, located three blocks east and one block north of the Ross School. No permit is required for this structure.

City of Ann Arbor Parking

City of Ann Arbor Parking Information

Map of Downtown Ann Arbor Parking

Campus Parking

UM Visitor Parking Information

Map of UM Visitor Parking

==Hotels==

Campus Inn 734-769-2200 or 1-800-666-8693

$214/night. 616 East Huron St., Ann Arbor, MI 48109

Bell Tower Hotel 1-800-562-3559

$149-$158/night. 300 South Thayer, Ann Arbor, MI 48109

Inn at the Michigan League 734-764-3177

$135/night + tax. 911 North University, Ann Arbor, MI 48109

The Executive Learning and Conference Center 734-764-7677

$155/night +tax

Book your room by clicking here

710 East University Dr., Ann Arbor, MI 48109

Ann Arbor Regent Hotel & Suites

Single occupancy - $92.00/night + tax

Double occupancy-$102.00/night +tax

2455 Carpenter Rd., Ann Arbor, MI 48108

(complimentary shuttle available)

For a complete list of hotels in the area, click here.

Main Page

2010-03-09T17:53:34Z

Ljbaker:

{| style="width:100%; background:#fcfcfc; margin-top:1.2em; border:1px solid #ccc;" |
| style="width:100%; text-align:center; white-space:nowrap; color:#000;" |
<div style="font-size:162%; border:none; margin:0; padding:.1em; color:#000;">Abecasis Group Wiki</div>
|}

[[Image:2009.08_Group_Retreat_Photo.jpg|400px|center|Group Photo]]

== Welcome! ==

Welcome to our brand new wiki!

If you would like to contribute, [[Special:UserLogin|log-in]] or [http://csgwiki.sph.umich.edu/index.php?title=Special:UserLogin&type=signup create an account]. We recommend using your e-mail address or Michigan uniqname as your user id.

For basic instructions, see [http://en.wikipedia.org/wiki/Wikipedia:Tutorial the Wikipedia Tutorial].

== Sequence Analysis Tools ==

We are developing several tools for the analysis of next generation sequence data.

=== [[Read Mapping]] ===

[[Karma|Karma]] - Our fast short read aligner, which generates [[Mapping Quality Scores]]

[[Karma-colorspace|Karma-ColorSpace]] - QUICKSTART on mapping color space reads

[[Examples|Examples]] - Sample command lines with discussion

=== Variant Calling ===

[[glfSingle]] - Variant calling for a single, deeply sequenced individual

[[glfTrio]] - Variant calling for a single, deeply sequenced nuclear family with two parents and one child

[[glfMultiples]] -- Variant calling for multiple, unrelated individuals

=== Variant Annotation ===

[[vcfCodingSnps]] -- Annotate coding variants in a VCF file.

=== Quality Control Utilities ===

[[FastQ Validator]] -- Check that a FASTQ file conforms to specification.

[[FastQFile]] -- Read a FASTQ file sequence by sequence. Validating the sequence as it is read.

[[BamIdentityCheck]] -- Check that mapped reads are consistent with known genotypes for each individual.

=== [[Links to Sequence Analysis Tools|Other Useful Links]] ===

== Projects ==

[[SardiNIA]] - The SardiNIA longitudinal study of aging.

[[1000 Genomes Project Pilot 1 SNP Calling]]

== Learn Genetics ==

Faculty in the group teach in a variety of formal and informal settings. [[Class Notes|Class notes]] and relevant discussion are archived here.

==Abecasis Group Meeting==

2:30-4:00 p.m. on Fridays, room 2610, SPH I.
Please note April 9, please use room 2690, SPH I.

[[Image:GoncaloAbecasis.jpg|300px|center]]

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Ljbaker: Abecasis Group Meeting

'''Abecasis Group Meetings'''
Fridays, 2:30 p.m.-4:00 p.m.
Room 2610, SPH I (except for April 9, use room 2690)