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2010-07-16T19:18:49Z

Mwsnyder: /* Abecasis Group Meeting */

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<div style="font-size:162%; border:none; margin:0; padding:.1em; color:#000;">Abecasis Group Wiki</div>
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[[Image:2009.08_Group_Retreat_Photo.jpg|400px|center|Group Photo]]

== Welcome! ==

Welcome to our brand new wiki!

If you would like to contribute, [[Special:UserLogin|log-in]] or [http://csgwiki.sph.umich.edu/index.php?title=Special:UserLogin&type=signup create an account]. We recommend using your e-mail address or Michigan uniqname as your user id.

For basic instructions, see [http://en.wikipedia.org/wiki/Wikipedia:Tutorial the Wikipedia Tutorial].

== Sequence Analysis Tools ==

We are developing [[Software|software tools]] for the analysis of next generation sequence data.

# Read Mapping with [[Karma]]
# Variant Calling with [[glfSingle]], [[glfTrio]] and [[glfMultiples]]
# Variant Annotations using [[vcfCodingSnps]]
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], and [[BamGenotypeCheck]]
# File Readers using [[C++ Library: libbam|BamFile]] and [[C++ Library: libfqf|FastQFile]]
# File Conversions using [[bam2FastQ]]

== Projects ==

[[SardiNIA]] - The SardiNIA longitudinal study of aging.

[[1000 Genomes Project Pilot 1 SNP Calling]]

== Learn Genetics ==

Faculty in the group teach in a variety of formal and informal settings. [[Class Notes|Class notes]] and relevant discussion are archived here.

==Abecasis Group Meeting==

2:30-4:00 p.m. on Fridays, room 2610, SPH I.

Genome Analysis Wiki - User contributions [en]

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