Loading...
GenerateStatistics
SamFile
GenomeSequence
GenomeSequence::GenomeSequence()
GenomeSequence::GenomeSequence(std::string &referenceFilename)
GenomeSequence::GenomeSequence(const char *referenceFilename)
getBases
SequenceCoverageReader
getChromosome
GenomeSequence::getChromosome(genomeIndex_t position)
GenomeSequence::getChromosome(const char *chromosomeName)
getChromosomeCount
GenomeSequence
getChromosomeSize
GenomeSequence
getChromosomeStart
GenomeSequence
getChunksForRegion
BamIndex
GetCurrentRecordCount
SamFile::GetCurrentRecordCount()
GlfFile::getCurrentRecordCount()
getDataPtr
GenomeSequence
getExpandedString
Cigar
getExpectedQueryBaseCount
Cigar
getExpectedReferenceBaseCount
Cigar
GetFailure
SamFile::GetFailure()
GlfFile::getFailure()
getGenomePosition
GenomeSequence::getGenomePosition(const char *chromosomeName, unsigned int chromosomeIndex)
GenomeSequence::getGenomePosition(int chromosome, unsigned int chromosomeIndex)
GenomeSequence::getGenomePosition(const char *chromosomeName)
getHeaderTextString
GlfHeader
getIndel1
GlfRecord
getIndel2
GlfRecord
getLk
GlfRecord
getLkHet
GlfRecord
getLkHom1
GlfRecord
getLkHom2
GlfRecord
getMinDepth
GlfRecord
getMinLk
GlfRecord
getMismatchCount
GenomeSequence
getName
GlfRefSection
getNextRecord
GlfFile
getNextRefSection
GlfFile
getNumBeginClips
Cigar
getNumberBases
GenomeSequence
getNumEndClips
Cigar
GetNumOverlaps
SamFile
getNumRefs
BamIndex
getOffset
GlfRecord
getQualities
ReadInsertion::getQualities(std::string &phredQualities)
ReadInsertion::getQualities(char *phredQualities, int maxLength)
getReadDepth
GlfRecord
getRecordType
GlfRecord
getRefBase
GlfRecord
getRefBaseChar
GlfRecord
getReferenceMinMax
BamIndex
getRefLen
GlfRefSection
getRmsMapQ
GlfRecord
GetStatus
SamFile::GetStatus()
GlfFile::getStatus()
GlfStatus::getStatus()
GetStatusMessage
SamFile::GetStatusMessage()
GlfFile::getStatusMessage()
GlfStatus::getStatusMessage()
getStatusString
GlfStatus
getSumQ
GenomeSequence
GlfException
GlfException::GlfException()
GlfException::GlfException(const std::string &what_arg)
GlfException::GlfException(GlfStatus::Status status, const std::string &errorMsg)
GlfException::GlfException(const GlfStatus &status)
GlfFile
GlfFile::GlfFile()
GlfFile::GlfFile(const char *filename, OpenType mode=READ)
GlfFileReader
GlfFileReader::GlfFileReader()
GlfFileReader::GlfFileReader(const char *filename)
GlfFileWriter
GlfFileWriter::GlfFileWriter()
GlfFileWriter::GlfFileWriter(const char *filename)
GlfHeader
GlfHeader
GlfRecord
GlfRecord
GlfRefSection
GlfRefSection
GlfStatus
GlfStatus
Searching...
No Matches