SamFilter Member List

This is the complete list of members for SamFilter, including all inherited members.
clipOnMismatchThreshold(SamRecord &record, GenomeSequence &refSequence, double mismatchThreshold) (defined in SamFilter)SamFilter [static]
CLIPPED enum value (defined in SamFilter)SamFilter
FILTERED enum value (defined in SamFilter)SamFilter
filterOnMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint32_t qualityThreshold, uint8_t defaultQualityInt) (defined in SamFilter)SamFilter [static]
filterRead(SamRecord &record) (defined in SamFilter)SamFilter [static]
FilterStatus enum name (defined in SamFilter)SamFilter
NONE enum value (defined in SamFilter)SamFilter
sumMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint8_t defaultQualityInt) (defined in SamFilter)SamFilter [static]
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