View source for SEQMIX

== Overview ==

'''SEQMIX''' is a C++ program that takes advantage of off-targeted sequence reads from exome/targeted sequencing experiments for accurate local ancestry inference.

== Method ==

Before running SEQMIX, it is important to pre-process your data with a LD pruning step, which identify sites that are in high LD (r^2 > 0.1) and keep the sites with a higher sequence depth into the model. Since the sequence depth distribution is sample dependent, it is necessary to prune the sequence data for each individual.

== Download ==

(Coming soon)

== Related Programs ==

Local ancestry inference with high density genotype array data can be done with existing software [[[HAPMIX]]], [[[Lamp]]], [[[ANCESTRYMAP]]].

Whole genome ancestry inference with ultra low coverage sequence data can be analyzed with [[[LASER]]].