http://genome.sph.umich.edu/w/index.php?action=history&feed=atom&title=830_-_BestAlignment%3A%3AEvaluateAlignment%28%29_%28main_loop%29 2026-09-26T12:05:14Z Revision history for this page on the wiki MediaWiki 1.43.1 http://genome.sph.umich.edu/w/index.php?title=830_-_BestAlignment::EvaluateAlignment()_(main_loop)&diff=8899&oldid=prev 2013-10-28T17:46:13Z

<p>Created page with &quot;&lt;source lang=&quot;cpp&quot;&gt; void BestAlignment::EvaluateAlignment(MaqIndex &amp; index, FastQ &amp; read, unsigned int offset, bool fwd) { unsigned int start, stop; index.LookupWord(read....&quot;</p> <p><b>New page</b></p><div>&lt;source lang=&quot;cpp&quot;&gt;<br /> void BestAlignment::EvaluateAlignment(MaqIndex &amp; index, FastQ &amp; read, unsigned int offset, bool fwd)<br /> {<br /> unsigned int start, stop;<br /> <br /> index.LookupWord(read.sequence, offset, start, stop); <br /> <br /> for (unsigned int i = start; i &lt;= stop; i++)<br /> EvaluateAlignment(index.reference, read, index.sortedPositions[i] - offset, fwd);<br /> }<br /> &lt;/source&gt;</div>

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