Goncalo: Created page with " void MaqIndex::BuildIndex() { // This function could use quite a lot of memory ... // 4 bytes per word // 4 bytes per position // 4 bytes per ..."

2013-10-28T17:38:41Z

Created page with "<source lang="cpp"> void MaqIndex::BuildIndex() { // This function could use quite a lot of memory ... // 4 bytes per word // 4 bytes per position // 4 bytes per ..."

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<source lang="cpp">
void MaqIndex::BuildIndex()
{
// This function could use quite a lot of memory ...
// 4 bytes per word
// 4 bytes per position
// 4 bytes per word in the word index

bases = 0;
for (unsigned int i = 0; i < mask.Length(); i++)
if (mask[i] == '1')
bases++;

unsigned int indexSize = 0;
for (unsigned int i = 0; i < reference.Length(); i++)
if (GetReferenceWord(i) != -1)
indexSize++;

sortedPositions.PreAllocate(indexSize);
for (unsigned int i = 0; i < reference.Length(); i++)
if (GetReferenceWord(i) != -1)
sortedPositions.Push(i);

SortIndex();
}
</source>

830 - MaqIndex::BuildIndex() - Revision history

Goncalo: Created page with " void MaqIndex::BuildIndex() { // This function could use quite a lot of memory ... // 4 bytes per word // 4 bytes per position // 4 bytes per ..."