http://genome.sph.umich.edu/w/index.php?action=history&feed=atom&title=830_-_MarkovModel%3A%3AWalkLeft%28%29 2026-09-25T22:26:55Z Revision history for this page on the wiki MediaWiki 1.43.1 http://genome.sph.umich.edu/w/index.php?title=830_-_MarkovModel::WalkLeft()&diff=14553&oldid=prev 2017-01-19T13:24:58Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:24, 19 January 2017</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l15">Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   if (observed[markers - 1])</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   if (observed[markers - 1])</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>       Condition(matrix[markers - 1], haplotypes, markers - 1, observed[markers - 1], E[markers - 1], freqs[observed[markers - 1]][markers - 1]);</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>       Condition(matrix[markers - 1], haplotypes, markers - 1, observed[markers - 1],  </div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">                </ins>E[markers - 1], freqs[observed[markers - 1]][markers - 1]);</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   }</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   }</div></td></tr> </table>

Goncalo http://genome.sph.umich.edu/w/index.php?title=830_-_MarkovModel::WalkLeft()&diff=8730&oldid=prev 2013-09-25T18:42:25Z

<p>Created page with &quot;&lt;source lang=&quot;cpp&quot;&gt; void MarkovModel::WalkLeft(char * observed, char ** haplotypes, float ** freqs) { // Initialize likelihoods at first position for (int i = 0; i &lt; ...&quot;</p> <p><b>New page</b></p><div>&lt;source lang=&quot;cpp&quot;&gt;<br /> void MarkovModel::WalkLeft(char * observed, char ** haplotypes, float ** freqs)<br /> {<br /> // Initialize likelihoods at first position<br /> for (int i = 0; i &lt; states; i++)<br /> matrix[0][i] = 1.;<br /> <br /> // Scan along chromosome<br /> for (int i = 0; i &lt; markers - 1; i++)<br /> {<br /> if (observed[i])<br /> Condition(matrix[i], haplotypes, i, observed[i], E[i], freqs[observed[i]][i]);<br /> Transpose(matrix[i], matrix[i+1], R[i]);<br /> }<br /> <br /> if (observed[markers - 1])<br /> Condition(matrix[markers - 1], haplotypes, markers - 1, observed[markers - 1], E[markers - 1], freqs[observed[markers - 1]][markers - 1]);<br /> }</div>

Goncalo