BamUtil: validate - Revision history

Mktrost at 18:05, 6 January 2014

2014-01-06T18:05:08Z

← Older revision		Revision as of 14:05, 6 January 2014
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	--params : Print the parameter settings		--params : Print the parameter settings
	</pre>		</pre>
			{{PhoneHomeParamDesc}}

	== Required Parameters ==		== Required Parameters ==

2014-01-06T17:59:28Z

2012-10-22T14:16:27Z

← Older revision		Revision as of 10:16, 22 October 2012
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	== Download ==		== Download ==
	http://genome.sph.umich.edu/wiki/~~Software#Download~~		http://genome.sph.umich.edu/wiki/BamUtil
	~~The~~ BAM Validator is found in ~~stagen~~/~~src~~/bam and is ~~called bam~~ (~~statgen/src~~/bin/bam).		After compiling, the BAM Validator is found in bamUtil/bin/bam and is the "validate" subprogram (bamUtil/bin/bam validate).

	== Purpose ==		== Purpose ==

2011-09-02T17:25:02Z

Fix Categories

2011-09-02T17:24:25Z

Reorganize categories

2011-09-02T17:23:26Z

2011-09-02T17:14:30Z

moved BamValidator to BamUtil: validate: Rename to be like the other subtypes of BamUtil.

← Older revision	Revision as of 13:14, 2 September 2011
(No difference)

2011-09-02T16:26:01Z

Update categories

2011-07-06T13:20:18Z

← Older revision		Revision as of 09:20, 6 July 2011
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	The following will give the most information (without validating that the file is sorted):		The following will give the most information (without validating that the file is sorted):
	./bam validate --in <inputFile> --verbose		./bam validate --in <inputFile> --verbose

			=== Output ===
			The error details (--verbose) and the statistics are printed to stderr. If you want that to go to a file you need to redirect stderr.

			For a bash shell, redirect to stderr by doing:
			./bam validate --in <inputFile> --verbose 2> outputFile.txt

2010-11-02T06:11:45Z

← Older revision		Revision as of 02:11, 2 November 2010
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	[[Category:Software~~\|BamValidator~~]]		[[Category:Software]]
	[[Category:~~C++~~]]		[[Category:StatGen Download]]
	[[Category:~~libStatGen]]~~		[[Category:BAM Software]]
	~~[[Category:libStatGen~~ BAM]]

	== Status ==		== Status ==