C++ Class: CigarRoller - Revision history

Ppwhite: /* Cigar */

2017-02-02T16:00:06Z

Cigar

← Older revision		Revision as of 12:00, 2 February 2017
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	The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.		The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.

	See: http://~~www~~.sph.umich.edu/~~csg~~/mktrost/doxygen/current/classCigar.html for documentation.		See: http://csg.sph.umich.edu//mktrost/doxygen/current/classCigar.html for documentation.

	The static methods are helpful for determining information about the operator.		The static methods are helpful for determining information about the operator.
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	See [[C++ Class: CigarRoller#Determining the Number of Reference and Read/Query Overlaps\|Determining the Number of Reference and Read/Query Overlaps]] for a more detailed explanation with examples as to how determining overlaps works.		See [[C++ Class: CigarRoller#Determining the Number of Reference and Read/Query Overlaps\|Determining the Number of Reference and Read/Query Overlaps]] for a more detailed explanation with examples as to how determining overlaps works.


	= CigarRoller=		= CigarRoller=

2017-02-02T14:52:16Z

CigarRoller

← Older revision		Revision as of 10:52, 2 February 2017
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	The purpose of this class is to provide accessors for setting, updating, modifying the CIGAR object. It is a child class of Cigar.		The purpose of this class is to provide accessors for setting, updating, modifying the CIGAR object. It is a child class of Cigar.

	See: http://~~www~~.sph.umich.edu/~~csg~~/mktrost/doxygen/current/classCigarRoller.html for documentation.		See: http://csg.sph.umich.edu//mktrost/doxygen/current/classCigarRoller.html for documentation.


	= Mapping Between Reference and Read/Query =		= Mapping Between Reference and Read/Query =

2011-08-23T22:16:51Z

← Older revision		Revision as of 18:16, 23 August 2011
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	= Cigar=		= Cigar=
	This class is part of [[~~C++ Library~~: ~~libStatGen~~]].		This class is part of [[libStatGen: general]].

	The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.		The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.
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	= CigarRoller=		= CigarRoller=
	This class is part of [[~~C++ Library~~: general]].		This class is part of [[libStatGen: general]].

	The purpose of this class is to provide accessors for setting, updating, modifying the CIGAR object. It is a child class of Cigar.		The purpose of this class is to provide accessors for setting, updating, modifying the CIGAR object. It is a child class of Cigar.

2011-08-23T22:14:59Z

@@ Line 8: / Line 8: @@
 The purpose of this class is to provide utilities for processing CIGARs.  It has read-only operators that do not allow modification to the class other than for lazy-evaluation.
-See: [http://www.sph.umich.edu/csg/mktrost/doxygen/current/classCigar.html http://www.sph.umich.edu/csg/mktrost/doxygen/current/classCigar.html] for documentation.
+See: http://www.sph.umich.edu/csg/mktrost/doxygen/current/classCigar.html for documentation.
 The static methods are helpful for determining information about the operator.
@@ Line 18: / Line 18: @@
 = CigarRoller=
-This class is part of [[C++ Library: libcsg|libcsg]].
+This class is part of [[C++ Library: general]].
 The purpose of this class is to provide accessors for setting, updating, modifying the CIGAR object.  It is a child class of Cigar.
-== Public Methods ==
+See: http://www.sph.umich.edu/csg/mktrost/doxygen/current/classCigarRoller.html for documentation.

2011-08-23T22:05:02Z

2010-11-17T20:15:29Z

2010-11-02T06:00:15Z

← Older revision		Revision as of 02:00, 2 November 2010
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			[[Category:Software]]
			[[Category:C++]]
			[[Category:libStatGen]]
			[[Category:libStatGen general]]

	= Cigar=		= Cigar=
	This class is part of [[C++ Library: ~~libcsg\|libcsg~~]].		This class is part of [[C++ Library: libStatGen]].

	The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.		The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.
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	getNumOverlaps(0,5,1) = 4 - with a different start position, this range overlaps the read with 4 bases		getNumOverlaps(0,5,1) = 4 - with a different start position, this range overlaps the read with 4 bases
	getNumOverlaps(32,40,32) = 4 - with a different start position, this range overlaps the read with 4 bases		getNumOverlaps(32,40,32) = 4 - with a different start position, this range overlaps the read with 4 bases


	~~[[Category:C++]]~~
	~~[[Category:libcsg]]~~

2010-10-11T16:15:36Z

Cigar

← Older revision		Revision as of 12:15, 11 October 2010
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	This class is part of [[C++ Library: libcsg\|libcsg]].		This class is part of [[C++ Library: libcsg\|libcsg]].

	~~This~~ purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.		The purpose of this class is to provide utilities for processing CIGARs. It has read-only operators that do not allow modification to the class other than for lazy-evaluation.

	== static Methods ==		== static Methods ==

2010-09-29T22:37:38Z

Public Methods

← Older revision		Revision as of 18:37, 29 September 2010
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	\|-		\|-
	\| <code>CigarOperator & Cigar::operator [] (int i)</code>		\| <code>CigarOperator & Cigar::operator [] (int i)</code>
			\| Return the Cigar Operation at the specified index (starting at 0).
			\|-
			\| <code>CigarOperator & Cigar::getOperator(int i)</code>
	\| Return the Cigar Operation at the specified index (starting at 0).		\| Return the Cigar Operation at the specified index (starting at 0).
	\|-		\|-

2010-09-29T22:36:59Z

Public Methods

← Older revision		Revision as of 18:36, 29 September 2010
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	\| Returns the character code (M, I, D, N, S, H, or P) associated with this operation.		\| Returns the character code (M, I, D, N, S, H, or P) associated with this operation.
	\|-		\|-
	\| <code>bool CigarOperator::operator == (CigarOperator &rhs)</code>		\| <code>bool CigarOperator::operator == (const CigarOperator &rhs)</code>
	\| Returns true if the passed in operator is the same as this operator, false if not.		\| Returns true if the passed in operator is the same as this operator, false if not.
	\|-		\|-
	\| <code>bool CigarOperator::operator != (CigarOperator &rhs)</code>		\| <code>bool CigarOperator::operator != (const CigarOperator &rhs)</code>
	\| Returns true if the passed in operator is not the same as this operator, false if they are the same.		\| Returns true if the passed in operator is not the same as this operator, false if they are the same.
	\|}		\|}


	= CigarRoller=		= CigarRoller=