C++ Class: Pedigree Example - Revision history

Pha: /* Example */

2010-04-13T20:37:06Z

Example

← Older revision		Revision as of 16:37, 13 April 2010
Line 52:		Line 52:
	// Name of the first allele, typically "A", "C", "G" or "T" for SNPs		// Name of the first allele, typically "A", "C", "G" or "T" for SNPs
	String label = info.GetAlleleLabel(1);		String label = info.GetAlleleLabel(1);

			// Genotype for a specific individual at a specific marker
			ped[0].markers[0].isKnown(); // Test if genotype is known
			ped[0].markers[0].isHomozygous(); // Test if genotype is homozygous
			ped[0].markers[0][0]; // Index of first allele
			ped[0].markers[0][1]; // Index of second allele
	}		}
	</source>		</source>

Pha: /* Example */

2010-04-13T20:35:20Z

Example

@@ Line 31: / Line 31: @@
       return 0;
+      }
    // Get some genotype statistics for the first marker
    printf("Statistics for marker %s\n", (const char *) ped.markerNames[0]);
+   }
 </source>

Pha: /* Example */

2010-04-13T20:31:59Z

Example

← Older revision		Revision as of 16:31, 13 April 2010
Line 33:		Line 33:

	// Get some genotype statistics for the first marker		// Get some genotype statistics for the first marker
	printf("Statistics for marker %s\n", (const char *) ped.markerNames[0]);		printf("Statistics for marker %s\n", (const char *) ped.markerNames[0]);
	}		}
	</source>		</source>

Pha: Created page with '== Example == #include "Pedigree.h" int main(int argc, char ** argv); { Pedigree ped; // The data file contains a description of the contents of the…'

2010-04-13T20:31:14Z

Created page with '== Example == <source lang="cpp"> #include "Pedigree.h" int main(int argc, char ** argv); { Pedigree ped; // The data file contains a description of the contents of the…'

New page

== Example ==

<source lang="cpp">

#include "Pedigree.h"

int main(int argc, char ** argv);
{
Pedigree ped;

// The data file contains a description of the contents of the
// pedigree file, including for example, a list of marker and
// trait names
ped.Prepare("pedigree.dat");

// The pedigree file contains a list of individuals, stored one
// per row, with specific information about each individual as
// detailed in the data file.
ped.Load("pedigree.ped");

printf("Loaded %d individuals\n", ped.count);
printf("Loaded %d markers\n", ped.markerCount);

// Print out names of the first 10 individuals
for (int i = 0; i < max(ped.count, 10); i++)
printf("Individual #1 is labeled %s\n", (const char *) ped[i].pid);

if (ped.markerCount == 0)
{
printf("No marker data available!\n");
return 0;
}

// Get some genotype statistics for the first marker
printf("Statistics for marker %s\n", (const char *) ped.markerNames[0]);
}
</source>