C++ Library: general Change Log - Revision history

Mktrost: Update Deprecated Info

2012-05-01T16:57:20Z

Update Deprecated Info

← Older revision		Revision as of 12:57, 1 May 2012
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	~~'''~~ This change log ~~is from~~ the ~~deprecated~~ statgen repository~~.'''~~		{\| style="width:100%; background:#FF8989; margin-top:1.2em; border:1px solid #ccc;" \|
			\| style="width:100%; text-align:center; white-space:nowrap; color:#000;" \|
			<div style="font-size:162%; border:none; margin:0; padding:.1em; color:#000;">This change log & the statgen repository have been DEPRECATED

	~~'''~~ To see ~~the~~ changes for the new libStatGen repository, consult the github history: ~~https://github.com/statgen/libStatGen/commits/master/'''~~		To see changes for the new libStatGen repository, consult the github history:

			https://github.com/statgen/libStatGen/commits/master/</div>
			\|}

	= general Change Log =		= general Change Log =

2011-08-24T13:25:05Z

← Older revision		Revision as of 09:25, 24 August 2011
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	~~[[Category~~:libStatGen]]		''' This change log is from the deprecated statgen repository.'''
	~~[[Category:libStatGen general]]~~
			''' To see the changes for the new libStatGen repository, consult the github history: https://github.com/statgen/libStatGen/commits/master/'''


	= general Change Log =		= general Change Log =

2010-11-02T05:56:31Z

← Older revision		Revision as of 01:56, 2 November 2010
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	= ~~genearl~~ Change Log =		[[Category:libStatGen]]
			[[Category:libStatGen general]]

			= general Change Log =
	This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users can see what bugs have been fixed, or what new features have been added.		This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users can see what bugs have been fixed, or what new features have been added.

2010-11-02T05:56:04Z

← Older revision		Revision as of 01:56, 2 November 2010
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	= ~~libcsg~~ Change Log =		= genearl Change Log =
	This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users can see what bugs have been fixed, or what new features have been added.		This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users can see what bugs have been fixed, or what new features have been added.


	== Enhancements/Updates/Fixes ==		== Enhancements/Updates/Fixes ==
			=== 11/01/2010 ===
			* made part of statgen library

	=== 09/29/2010 ===		=== 09/29/2010 ===
	* Updated CigarRoller to have a method to set a CigarRoller from another CigarRoller.		* Updated CigarRoller to have a method to set a CigarRoller from another CigarRoller.

2010-11-02T05:55:33Z

← Older revision	Revision as of 01:55, 2 November 2010
(No difference)

2010-09-29T21:44:27Z

@@ Line 4: / Line 4: @@
 == Enhancements/Updates/Fixes ==
 === 08/11/2010 ===
 * Split CigarRoller into a base class, Cigar, and a child class, CigarRoller.

2010-08-11T12:38:19Z

← Older revision		Revision as of 08:38, 11 August 2010
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	== Enhancements/Updates/Fixes ==		== Enhancements/Updates/Fixes ==
			=== 08/11/2010 ===
			* Split CigarRoller into a base class, Cigar, and a child class, CigarRoller.
			** Cigar has no accessors that allow modification to the cigar, but it does allow for modification to the class due to lazy evaluation.
			** CigarRoller is the child class that allows modification of the cigar.

	=== 08/03/2010 ===		=== 08/03/2010 ===
	* Add methods to CigarRoller		* Add methods to CigarRoller

2010-08-03T15:22:37Z

← Older revision		Revision as of 11:22, 3 August 2010
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	== Enhancements/Updates/Fixes ==		== Enhancements/Updates/Fixes ==
			=== 08/03/2010 ===
			* Add methods to CigarRoller
			** getNumOverlaps - takes a region and the query start position and returns the number of overlaps (cigar 'M') in that region
			** getRefPosition - takes a query index and the query start position and returns the associated reference position or INDEX_NA
			** getQueryIndex - takes a reference position and the query start position and returns the associated query index or INDEX_NA

	=== 07/16/2010 ===		=== 07/16/2010 ===
	* Cigar Roller: fix the way soft clips are interpreted for mapping between the reference and the read indices. They were being treated as if they did not exist in neither the reference nor the read. They are now treated like inserts, in the read, but not in the Reference.		* Cigar Roller: fix the way soft clips are interpreted for mapping between the reference and the read indices. They were being treated as if they did not exist in neither the reference nor the read. They are now treated like inserts, in the read, but not in the Reference.

2010-07-16T16:46:59Z

← Older revision		Revision as of 12:46, 16 July 2010
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	== Enhancements/Updates/Fixes ==		== Enhancements/Updates/Fixes ==
			=== 07/16/2010 ===
			* Cigar Roller: fix the way soft clips are interpreted for mapping between the reference and the read indices. They were being treated as if they did not exist in neither the reference nor the read. They are now treated like inserts, in the read, but not in the Reference.

	=== 6/23/2010 ===		=== 6/23/2010 ===
	* Update [[C++ Class: InputFile\|'''InputFile''']]		* Update [[C++ Class: InputFile\|'''InputFile''']]

2010-06-23T22:03:38Z

← Older revision		Revision as of 18:03, 23 June 2010
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	== Enhancements/Updates/Fixes ==		== Enhancements/Updates/Fixes ==
			=== 6/23/2010 ===
			* Update [[C++ Class: InputFile\|'''InputFile''']]
			** Renamed GzFileType and the GZ enum to GzipFileType and GZIP enum.
			** Renamed StdFileType and the STD enum to UncompressedFileType and UNCOMPRESSED enum
			** Changed the FileTypeEnum to ifileCompression.
			** Add an ifileCompression write mode as a parameter to ifopen (and the InputFile constructor called by ifopen) that indicates the type of compression to use when opening a file for writing.
			** Modified the meaning of the DEFAULT file type when opening for write to be UNCOMPRESSED unless the filename ends in ".gz" then it is opened as GZIP.
			** Removed static method <code>void InputFile::setWriteFileType(FileTypeEnum fileType)</code> that allows a user to specify what type of file to open for writing rather than using the extension (default). Must be called prior to ifopen.

	=== 5/20/2010 ===		=== 5/20/2010 ===
	* Update [[C++ Class: InputFile\|'''InputFile''']]		* Update [[C++ Class: InputFile\|'''InputFile''']]