EMADS - Revision history

Svrieze at 03:03, 15 November 2013

2013-11-15T03:03:07Z

← Older revision		Revision as of 23:03, 14 November 2013
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	[[File:EMADS_thumb5.png\|thumb\|340px\|right]]		[[File:EMADS_thumb5.png\|thumb\|340px\|right]]
	Welcome! This is an informational page devoted to the EMADS consortium, the exome meta-analysis of drinking and smoking.		Welcome! This is an informational page devoted to the EMADS consortium, the exome meta-analysis of drinking and smoking.

Svrieze: /* Analyst Call */

2013-08-08T19:54:45Z

Analyst Call

← Older revision		Revision as of 15:54, 8 August 2013
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	'''The next primary call will take place on August 16 2013 at 11am EDT (4pm BST).'''		'''The next primary call will take place on August 16 2013 at 11am EDT (4pm BST).'''

	~~=== Analyst Call ===~~
	~~In addition, we have a (roughly) biweekly analyst call to discuss technical issues and analysis coordination.~~

	~~'''The next analyst call will be scheduled as needed (typically on a Thursday at 11am EDT (4pm BST)'''~~

	== Analysis Projects ==		== Analysis Projects ==

Svrieze: /* Primary Call */

2013-08-08T19:54:34Z

Primary Call

← Older revision		Revision as of 15:54, 8 August 2013
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	We have a primary teleconference on a monthly basis. Senior and junior investigators from each site contribute to consortium planning.		We have a primary teleconference on a monthly basis. Senior and junior investigators from each site contribute to consortium planning.

	'''The next primary call will take place on ~~July 19~~ 2013 at 11am EDT (4pm BST).'''		'''The next primary call will take place on August 16 2013 at 11am EDT (4pm BST).'''

	=== Analyst Call ===		=== Analyst Call ===

Svrieze: /* Analyst Call */

2013-06-20T13:58:02Z

Analyst Call

← Older revision		Revision as of 09:58, 20 June 2013
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	In addition, we have a (roughly) biweekly analyst call to discuss technical issues and analysis coordination.		In addition, we have a (roughly) biweekly analyst call to discuss technical issues and analysis coordination.

	'''The next analyst call will ~~take place~~ on ~~July 19 2013~~ at 11am EDT (4pm BST)'''		'''The next analyst call will be scheduled as needed (typically on a Thursday at 11am EDT (4pm BST)'''

	== Analysis Projects ==		== Analysis Projects ==

Svrieze: /* Primary Call */

2013-06-20T13:56:43Z

Primary Call

← Older revision		Revision as of 09:56, 20 June 2013
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	We have a primary teleconference on a monthly basis. Senior and junior investigators from each site contribute to consortium planning.		We have a primary teleconference on a monthly basis. Senior and junior investigators from each site contribute to consortium planning.

	'''The next primary call will take place on ~~June 21~~ 2013 at 11am EDT (4pm BST).'''		'''The next primary call will take place on July 19 2013 at 11am EDT (4pm BST).'''

	=== Analyst Call ===		=== Analyst Call ===

Svrieze: /* Analyst Call */

2013-06-20T13:56:32Z

Analyst Call

← Older revision		Revision as of 09:56, 20 June 2013
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	In addition, we have a (roughly) biweekly analyst call to discuss technical issues and analysis coordination.		In addition, we have a (roughly) biweekly analyst call to discuss technical issues and analysis coordination.

	'''The next analyst call will take place on ~~June 6~~ 2013 at 11am EDT (4pm BST)'''		'''The next analyst call will take place on July 19 2013 at 11am EDT (4pm BST)'''

	== Analysis Projects ==		== Analysis Projects ==

Svrieze: /* Data Security */

2013-05-28T16:44:25Z

Data Security

← Older revision		Revision as of 12:44, 28 May 2013
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	=== Data Security ===		=== Data Security ===
	Summary statistics of genetic variants are not truly de-identified, as they can still be used by a sufficiently sophisticated and motivated person to re-identify individuals. This concern must be taken very seriously, and any proposal to use EMADS data, even if only summary statistics, must have a plan to assure the safety and security of the data, protect against its re-release, and must guarantee that ~~they~~ will ~~not~~ attempt to re-identify the data.		Summary statistics of genetic variants are not truly de-identified, as they can still be used by a sufficiently sophisticated and motivated person to re-identify individuals. This concern must be taken very seriously, and any proposal to use EMADS data, even if only summary statistics, must have a plan to assure the safety and security of the data, protect against its re-release, and must guarantee that there will be no attempt to re-identify the data.

	=== Submitting Proposals ===		=== Submitting Proposals ===

Svrieze: /* Secondary Analyses of Existing Summary Data */

2013-05-28T16:43:53Z

Secondary Analyses of Existing Summary Data

← Older revision		Revision as of 12:43, 28 May 2013
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	=== Categories of Proposals ===		=== Categories of Proposals ===
	==== Secondary Analyses of Existing Summary Data ====		==== Secondary Analyses of Existing Summary Data ====
	At the time of this writing (5/7/2013), all summary statistics will be protected on University of Michigan servers, and curated by Scott and Goncalo. Proposals that call for analysis of existing data will be discussed by local site principal investigators. Note that some principal investigators may have to obtain permission from committees overseeing ~~the~~ study (e.g., for very large and/or complex cohorts). If approved, these proposals will be granted to selected portions of the summary statistics. Any manuscript generated from these secondary analyses must not be submitted for publication until the primary EMADS manuscript has been accepted for publication.		At the time of this writing (5/7/2013), all summary statistics will be protected on University of Michigan servers, and curated by Scott and Goncalo. Proposals that call for analysis of existing data will be discussed by local site principal investigators. Note that some principal investigators may have to obtain permission from committees overseeing their study before sharing summary statistics from that study (e.g., for very large and/or complex cohorts). If approved, these proposals will be granted access to selected portions of the summary statistics. Any manuscript generated from these secondary analyses must not be submitted for publication until the primary EMADS manuscript has been accepted for publication.

	In general, we expect most if not all proposals for secondary analysis of existing summary data to be approved.		In general, we expect most if not all proposals for secondary analysis of existing summary data to be approved.

Svrieze at 17:02, 24 May 2013

2013-05-24T17:02:43Z

← Older revision		Revision as of 13:02, 24 May 2013
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	# The senior investigators who strongly led/oversaw the writing and/or analysis of the paper, including a subset that are co-corresponding authors (usually 6 or fewer).		# The senior investigators who strongly led/oversaw the writing and/or analysis of the paper, including a subset that are co-corresponding authors (usually 6 or fewer).

	~~Protocol to consider proposals for (1) analysis of EMADS summary statistics and (2) requests for site investigators to perform additional analysis.~~		== Guidelines for Handling Proposals for Additional Analysis of EMADS Data ==

	== Proposals for Additional Analysis of EMADS Data ==
	In consultation with Goncalo, Scott will receive and coordinate proposals for discussion during regular conference calls.		In consultation with Goncalo, Scott will receive and coordinate proposals for discussion during regular conference calls.

	=== Categories of Proposals ===		=== Categories of Proposals ===
	==== Secondary Analyses of Existing Summary Data ====		==== Secondary Analyses of Existing Summary Data ====
	At the time of this writing (5/7/2013), all summary statistics will be protected on University of Michigan servers, and curated by Scott and Goncalo. Proposals that call for analysis of existing data will be discussed by local site principal investigators. Note that some principal investigators may have to obtain permission from committees overseeing ~~their~~ study (e.g., for very large and/or complex cohorts). If approved, these proposals will be granted to selected portions of the summary statistics. Any manuscript generated from these secondary analyses must not be submitted for publication until the primary EMADS manuscript has been accepted for publication.		At the time of this writing (5/7/2013), all summary statistics will be protected on University of Michigan servers, and curated by Scott and Goncalo. Proposals that call for analysis of existing data will be discussed by local site principal investigators. Note that some principal investigators may have to obtain permission from committees overseeing the study (e.g., for very large and/or complex cohorts). If approved, these proposals will be granted to selected portions of the summary statistics. Any manuscript generated from these secondary analyses must not be submitted for publication until the primary EMADS manuscript has been accepted for publication.

	The EMADS consortium should be listed as an author, if possible, in any resulting publication. If listing a consortium is not possible, for example due to journal guidelines, then individual EMADS investigators may be listed. Further, depending on the level of involvement from EMADS members in facilitating fulfillment of the proposal's aims, individual investigators may be named as well.

	In general, we expect most if not all proposals for secondary analysis of existing summary data to be approved.		In general, we expect most if not all proposals for secondary analysis of existing summary data to be approved.
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	Proposals that request local sites to perform additional analysis will be more difficult to implement. In the end, such proposals will be "at the mercy" of local sites, who may or may not agree to conduct the proposed analyses. Such proposals can be discussed on conference calls and local sites may volunteer to participate.		Proposals that request local sites to perform additional analysis will be more difficult to implement. In the end, such proposals will be "at the mercy" of local sites, who may or may not agree to conduct the proposed analyses. Such proposals can be discussed on conference calls and local sites may volunteer to participate.

	The EMADS consortium ~~will~~ be listed as an author in any resulting publication, and ~~existing~~ EMADS ~~authorship guidelines~~ will ~~be integrated or adopted~~.		=== Authorship for Publications Resulting from Proposals ===
			The EMADS consortium should be listed as an author, if possible, in any resulting publication. If listing a consortium is not possible, for example due to journal guidelines, then individual EMADS investigators may be listed. Further, depending on the level of involvement from EMADS members in facilitating fulfillment of the proposal's aims, individual investigators may be named as well.

			=== Data Security ===
			Summary statistics of genetic variants are not truly de-identified, as they can still be used by a sufficiently sophisticated and motivated person to re-identify individuals. This concern must be taken very seriously, and any proposal to use EMADS data, even if only summary statistics, must have a plan to assure the safety and security of the data, protect against its re-release, and must guarantee that they will not attempt to re-identify the data.

	=== Submitting Proposals ===		=== Submitting Proposals ===

Svrieze: /* Secondary Analyses of Existing Summary Data */

2013-05-24T16:52:22Z

Secondary Analyses of Existing Summary Data

← Older revision		Revision as of 12:52, 24 May 2013
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	=== Categories of Proposals ===		=== Categories of Proposals ===
	==== Secondary Analyses of Existing Summary Data ====		==== Secondary Analyses of Existing Summary Data ====
	At the time of this writing (5/7/2013), all summary statistics will be protected on University of Michigan servers, and curated by Scott and Goncalo. Proposals that call for analysis of existing data will be discussed by local site principal investigators. If approved, these proposals will be granted to selected portions of the summary statistics. Any manuscript generated from these secondary analyses must not be submitted for publication until the primary EMADS manuscript has been accepted for publication.		At the time of this writing (5/7/2013), all summary statistics will be protected on University of Michigan servers, and curated by Scott and Goncalo. Proposals that call for analysis of existing data will be discussed by local site principal investigators. Note that some principal investigators may have to obtain permission from committees overseeing their study (e.g., for very large and/or complex cohorts). If approved, these proposals will be granted to selected portions of the summary statistics. Any manuscript generated from these secondary analyses must not be submitted for publication until the primary EMADS manuscript has been accepted for publication.

	The EMADS consortium should be listed as an author, if possible, in any resulting publication. If listing a consortium is not possible, for example due to journal guidelines, then individual EMADS investigators may be listed. Further, depending on the level of involvement from EMADS members in facilitating fulfillment of the proposal's aims, individual investigators may be named as well.		The EMADS consortium should be listed as an author, if possible, in any resulting publication. If listing a consortium is not possible, for example due to journal guidelines, then individual EMADS investigators may be listed. Further, depending on the level of involvement from EMADS members in facilitating fulfillment of the proposal's aims, individual investigators may be named as well.