http://genome.sph.umich.edu/w/index.php?action=history&feed=atom&title=METAL_VERBOSE 2026-09-26T22:13:37Z Revision history for this page on the wiki MediaWiki 1.43.1 http://genome.sph.umich.edu/w/index.php?title=METAL_VERBOSE&diff=893&oldid=prev 2010-04-06T04:36:46Z

<p>Created page with &#039;The &#039;&#039;&#039;VERBOSE&#039;&#039;&#039; option is enabled with the &lt;code&gt;VERBOSE ON&lt;/code&gt; command. When this option is enabled METAL will print details of each analyzed SNP for each input file. Unles…&#039;</p> <p><b>New page</b></p><div>The &#039;&#039;&#039;VERBOSE&#039;&#039;&#039; option is enabled with the &lt;code&gt;VERBOSE ON&lt;/code&gt; command. When<br /> this option is enabled METAL will print details of each analyzed SNP for each input<br /> file. Unless you use an appropriate [[METAL ADDFILTER|filter]], this option can easily generate<br /> an unmanageable amount of ouput.<br /> <br /> Details for each SNP will be output after aligning alleles and strands to the same strand,<br /> but before any genomic control correction is applied. In sample size based analysis, the<br /> sample size, z-score and p-value will be output. In standard error based analyses, effect<br /> sizes and standard errors are output instead. In either case, allele frequency information<br /> will also be output if available.</div>

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