SEQMIX - Revision history

Youna: /* Download */

2013-11-04T07:07:35Z

Download

← Older revision		Revision as of 03:07, 4 November 2013
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	== Download ==		== Download ==
	Here is a tar ball [[Media:SEQMIX_0.1.tar]] which compresses the following three folders		Here is a tar ball [[Media:SEQMIX_0.1.tar]] for SEQMIX (version 0.1) which compresses the following three folders

	* libsrc: a folder contains source code from code written by Goncalo Abecasis		* libsrc: a folder contains source code from code written by Goncalo Abecasis

Youna: /* Download */

2013-11-04T07:07:10Z

Download

← Older revision		Revision as of 03:07, 4 November 2013
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	* allele frequency for Africans		* allele frequency for Africans
	* allele frequency for ~~European~~		* allele frequency for Europeans
	* genetic distance file		* genetic distance file
	* input vcf		* input vcf

Youna: /* Questions and Suggestions */

2013-11-04T07:06:56Z

Questions and Suggestions

← Older revision		Revision as of 03:06, 4 November 2013
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	The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to have them. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.		The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to have them. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.

	== ~~Questions and Suggestions~~ ==		== Maintainer ==

	Please contact Youna Hu (''youna@umich.edu'') if you have any questions or suggestions for SEQMIX.		Please contact Youna Hu (''youna@umich.edu'') if you have any questions or suggestions for SEQMIX.

Youna: /* Questions and Suggestions */

2013-11-04T07:06:25Z

Questions and Suggestions

← Older revision		Revision as of 03:06, 4 November 2013
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	== Questions and Suggestions ==		== Questions and Suggestions ==

	Please contact Youna Hu ''youna@umich.edu'' if you have any questions or suggestions for SEQMIX.		Please contact Youna Hu (''youna@umich.edu'') if you have any questions or suggestions for SEQMIX.

	== Related Programs ==		== Related Programs ==

Youna at 07:06, 4 November 2013

2013-11-04T07:06:12Z

← Older revision		Revision as of 03:06, 4 November 2013
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	The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to have them. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.		The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to have them. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.

			== Questions and Suggestions ==

			Please contact Youna Hu ''youna@umich.edu'' if you have any questions or suggestions for SEQMIX.

	== Related Programs ==		== Related Programs ==

Youna: /* Download */

2013-11-04T07:05:06Z

Download

← Older revision		Revision as of 03:05, 4 November 2013
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	* libsrc: a folder contains source code from code written by Goncalo Abecasis		* libsrc: a folder contains source code from code written by Goncalo Abecasis
	* src: source code for SEQMIX		* src: source code for SEQMIX
	* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX		* Release: example files and command file as well as the Readme.txt file that explains how to run SEQMIX

	Before you run SEQMIX, or even while you are running SEQMIX examples (summarized by the '''example.sh''' file), please refer to the '''Readme.txt''' file for detailed explanations of the two steps for running SEQMIX.		Before you run SEQMIX, or even while you are running SEQMIX examples (summarized by the '''example.sh''' file), please refer to the '''Readme.txt''' file for detailed explanations of the two steps for running SEQMIX.

Youna: /* Overview */

2013-11-04T07:04:41Z

Overview

← Older revision		Revision as of 03:04, 4 November 2013
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	== Overview ==		== Overview ==

	'''SEQMIX''' is a C++ program that takes advantage of off-targeted sequence reads from exome/targeted sequencing experiments for accurate local ancestry inference.		'''SEQMIX''' is a C++ program that takes advantage of off-targeted sequence reads from exome/targeted sequencing experiments for accurate local ancestry inference. The paper is currently accepted by AJHG and will appear at the November issue (link coming soon).

	== Method ==		== Method ==

Youna: /* Download */

2013-11-04T07:03:40Z

Download

← Older revision		Revision as of 03:03, 4 November 2013
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	* input vcf		* input vcf

	The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to ~~use it~~. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.		The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to have them. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.

	== Related Programs ==		== Related Programs ==

Youna: /* Download */

2013-11-04T07:03:24Z

Download

← Older revision		Revision as of 03:03, 4 November 2013
Line 14:		Line 14:
	* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX		* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX

	Before you run SEQMIX, or even while you are running SEQMIX examples (summarized by the example.sh file), please refer to the Readme.txt file for detailed ~~explanation~~ of the two steps for running SEQMIX.		Before you run SEQMIX, or even while you are running SEQMIX examples (summarized by the '''example.sh''' file), please refer to the '''Readme.txt''' file for detailed explanations of the two steps for running SEQMIX.

	Note that SEQMIX requires these specified files		Note that SEQMIX requires these specified files
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	* input vcf		* input vcf

	The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (youna@umich.edu) if you would like to use it. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.		The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (''youna@umich.edu'') if you would like to use it. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.

	== Related Programs ==		== Related Programs ==

Youna: /* Download */

2013-11-04T07:00:40Z

Download

← Older revision		Revision as of 03:00, 4 November 2013
Line 10:		Line 10:
	Here is a tar ball [[Media:SEQMIX_0.1.tar]] which compresses the following three folders		Here is a tar ball [[Media:SEQMIX_0.1.tar]] which compresses the following three folders

	* libsrc: a folder contains source code from code written by Goncalo		* libsrc: a folder contains source code from code written by Goncalo Abecasis
	* src: source code for SEQMIX		* src: source code for SEQMIX
	* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX		* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX