Software - Revision history

Hmkang at 21:20, 11 September 2021

2021-09-11T21:20:33Z

← Older revision		Revision as of 17:20, 11 September 2021
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	This page points to downloads, documentation, and papers for software that is written here at the [http://genome.sph.umich.edu Center for Statistical Genetics]		This page points to downloads, documentation, and papers for software that is written here at the [http://genome.sph.umich.edu Center for Statistical Genetics]

	If you have any questions or comments, please raise issue in ~~the corresponding~~ [https://github.com/statgen/ our GitHub repositories].		If you have any questions or comments, please raise issue in [https://github.com/statgen/ our GitHub repositories].

	=StatGen C++ Software=		=StatGen C++ Software=

2021-09-11T21:19:13Z

← Older revision		Revision as of 17:19, 11 September 2021
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	This page points to downloads, documentation, and papers for software that is written here at the [http://genome.sph.umich.edu Center for Statistical Genetics]		This page points to downloads, documentation, and papers for software that is written here at the [http://genome.sph.umich.edu Center for Statistical Genetics]

	If you have any questions or comments, please ~~email Mary Kate Wing (mktrost@umich~~.~~edu)~~.		If you have any questions or comments, please raise issue in the corresponding [https://github.com/statgen/ our GitHub repositories].

	=StatGen C++ Software=		=StatGen C++ Software=

2015-01-31T05:07:04Z

Variant Annotation

← Older revision		Revision as of 01:07, 31 January 2015
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	== Variant Annotation ==		== Variant Annotation ==
	*[[vcfCodingSnps]] - Annotate coding variants in a VCF file.		*[[vcfCodingSnps]] - Annotate coding variants in a VCF file.

			== Genotype Imputation ==
			*[[Minimac3]] - Fast and Efficient Genotype Imputation.

	== Additional Pedigree & Sequence Analysis Tools ==		== Additional Pedigree & Sequence Analysis Tools ==

2014-01-03T18:18:28Z

BAM Util Tools

@@ Line 34: / Line 34: @@
 ==== BAM Util Tools ====
-The following tools are part of the [[BamUtil|BamUtil program]].
+{{BamUtilPrograms}}
 === FASTQ ===

2013-06-10T14:46:40Z

Requested Tools

2013-02-25T21:26:03Z

Meta Analysis

← Older revision		Revision as of 17:26, 25 February 2013
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	=== Meta Analysis ===		=== Meta Analysis ===
	* [[Rare-Metal-Worker\|~~Rare-Metal-Worker~~ - generate summary level statistics for meta analysis using Rare-Metal]]		* [[Rare-Metal-Worker\|RAREMETALWORKER - generate summary level statistics for meta analysis using Rare-Metal]]
	* [[Rare-Metal\|~~Rare-Metal~~ - perform genome-wide meta analysis of rare variants]]		* [[Rare-Metal\|RAREMETAL - perform genome-wide meta analysis of rare variants]]

	=== Other Tools ===		=== Other Tools ===

2013-02-25T21:25:38Z

Meta Analysis

← Older revision		Revision as of 17:25, 25 February 2013
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	== Meta Analysis ==		=== Meta Analysis ===
	* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analysis using Rare-Metal]]		* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analysis using Rare-Metal]]
	* [[Rare-Metal\|Rare-Metal - perform genome-wide meta analysis of rare variants]]		* [[Rare-Metal\|Rare-Metal - perform genome-wide meta analysis of rare variants]]

2013-02-25T21:00:43Z

= Meta Analysis

← Older revision		Revision as of 17:00, 25 February 2013
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	=== Meta Analysis ==		== Meta Analysis ==
	* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analysis using Rare-Metal]]		* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analysis using Rare-Metal]]
	* [[Rare-Metal\|Rare-Metal - perform genome-wide meta analysis of rare variants]]		* [[Rare-Metal\|Rare-Metal - perform genome-wide meta analysis of rare variants]]

2013-02-06T14:30:00Z

Meta Analysis

← Older revision		Revision as of 10:30, 6 February 2013
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	=== Meta Analysis ===		=== Meta Analysis ==
	* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta ~~analyses~~ using Rare-Metal]]		* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analysis using Rare-Metal]]
			* [[Rare-Metal\|Rare-Metal - perform genome-wide meta analysis of rare variants]]

	=== Other Tools ===		=== Other Tools ===

2013-02-06T14:25:13Z

Meta Analysis

← Older revision		Revision as of 10:25, 6 February 2013
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	=== Meta Analysis ===		=== Meta Analysis ===
	* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analyses using Rare-~~Metals~~]]		* [[Rare-Metal-Worker\|Rare-Metal-Worker - generate summary level statistics for meta analyses using Rare-Metal]]

	=== Other Tools ===		=== Other Tools ===