http://genome.sph.umich.edu/w/index.php?action=history&feed=atom&title=VcfGenomeStat 2026-09-24T05:21:13Z Revision history for this page on the wiki MediaWiki 1.43.1 http://genome.sph.umich.edu/w/index.php?title=VcfGenomeStat&diff=2354&oldid=prev 2010-11-02T04:35:13Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 00:35, 2 November 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l41">Line 41:</td> <td colspan="2" class="diff-lineno">Line 41:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     Displays usage information and exits.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     Displays usage information and exits.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/pre&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/pre&gt;</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Software]]</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:StatGen Download]]</ins></div></td></tr> </table>

Mktrost http://genome.sph.umich.edu/w/index.php?title=VcfGenomeStat&diff=2353&oldid=prev 2010-11-02T04:19:38Z

<p>Created page with &#039;== Purpose == vcfGenomeStat - print flanking sequences and how often they appear for input vcf file. == Usage == &lt;pre&gt; ../bin/vcfGenomeStat [-L &lt;integer&gt;] [-w &lt;integer&gt;] [-l…&#039;</p> <p><b>New page</b></p><div>== Purpose ==<br /> vcfGenomeStat - print flanking sequences and how often they appear for input vcf file.<br /> <br /> == Usage ==<br /> &lt;pre&gt;<br /> ../bin/vcfGenomeStat [-L &lt;integer&gt;] [-w &lt;integer&gt;] [-l &lt;string&gt;] -o<br /> &lt;string&gt; -i &lt;string&gt; -r &lt;string&gt; [-v] [--]<br /> [--version] [-h]<br /> <br /> <br /> Where: <br /> <br /> -L &lt;integer&gt;, --max-line-length &lt;integer&gt;<br /> Maximun Line Length of the VCF file (default:1048576)<br /> <br /> -w &lt;integer&gt;, --win &lt;integer&gt;<br /> Window size for HomPolymerRun (default:10)<br /> <br /> -l &lt;string&gt;, --log &lt;string&gt;<br /> Log file - [out].log is default<br /> <br /> -o &lt;string&gt;, --out &lt;string&gt;<br /> (required) Output file<br /> <br /> -i &lt;string&gt;, --in &lt;string&gt;<br /> (required) Input VCF file<br /> <br /> -r &lt;string&gt;, --reference &lt;string&gt;<br /> (required) Karma&#039;s reference sequence<br /> <br /> -v, --verbose<br /> Turn on verbose mode<br /> <br /> --, --ignore_rest<br /> Ignores the rest of the labeled arguments following this flag.<br /> <br /> --version<br /> Displays version information and exits.<br /> <br /> -h, --help<br /> Displays usage information and exits.<br /> &lt;/pre&gt;</div>

Mktrost