Difference between revisions of "Main Page"

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(Sequence Analysis Tools)
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# Variant Calling with [[glfSingle]], [[glfTrio]] and [[glfMultiples]]
 
# Variant Calling with [[glfSingle]], [[glfTrio]] and [[glfMultiples]]
 
# Variant Annotations using [[vcfCodingSnps]]
 
# Variant Annotations using [[vcfCodingSnps]]
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], and [[BamGenotypeCheck]]
+
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[BamGenotypeCheck]], and [[BamValidator]]
 
# File Readers using [[C++ Library: libbam|BamFile]] and [[C++ Library: libfqf|FastQFile]]
 
# File Readers using [[C++ Library: libbam|BamFile]] and [[C++ Library: libfqf|FastQFile]]
 
# File Conversions using [[bam2FastQ]]
 
# File Conversions using [[bam2FastQ]]

Revision as of 17:25, 21 July 2010

Abecasis Group Wiki


Group Photo

Welcome!

Welcome to our brand new wiki!

If you would like to contribute, log-in or create an account. We recommend using your e-mail address or Michigan uniqname as your user id.

For basic instructions, see the Wikipedia Tutorial.

Sequence Analysis Tools

We are developing software tools for the analysis of next generation sequence data.

  1. Read Mapping with Karma
  2. Variant Calling with glfSingle, glfTrio and glfMultiples
  3. Variant Annotations using vcfCodingSnps
  4. Quality control using FastQValidator, BamGenotypeCheck, and BamValidator
  5. File Readers using BamFile and FastQFile
  6. File Conversions using bam2FastQ

Projects

SardiNIA - The SardiNIA longitudinal study of aging.

1000 Genomes Project Pilot 1 SNP Calling

Learn Genetics

Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here.

Abecasis Group Meeting

2:30-4:00 p.m. on Fridays, room 2610, SPH I.