Difference between revisions of "Main Page"

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[[vcfCodingSnps]] -- Annotate coding variants in a VCF file.
 
[[vcfCodingSnps]] -- Annotate coding variants in a VCF file.
  
=== Projects ===
+
== Projects ==
  
 
[[SardiNIA]] - The SardiNIA longitudinal study of aging.
 
[[SardiNIA]] - The SardiNIA longitudinal study of aging.

Revision as of 14:55, 14 December 2009

Abecasis Group Wiki


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Welcome!

Welcome to our brand new wiki!

If you would like to contribute, log-in or create an account. We recommend using your e-mail address or Michigan uniqname as your user id.

For basic instructions, see the Wikipedia Tutorial.

Sequence Analysis Tools

We are developing several tools for the analysis of next generation sequence data.

Read Mapping

Karma - Our fast short read aligner

Karma-ColorSpace - QUICKSTART on mapping color space reads

Examples - Sample command lines with discussion

Variant Calling

glfSingle - Variant calling for a single, deeply sequenced individual

glfTrio - Variant calling for a single, deeply sequenced nuclear family with two parents and one child

glfMultiples -- Variant calling for multiple, unrelated individuals

Variant Annotation

vcfCodingSnps -- Annotate coding variants in a VCF file.

Projects

SardiNIA - The SardiNIA longitudinal study of aging.