Biostatistics 666: Introduction to De Novo Assembly: Difference between revisions
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== Overview == | == Overview == | ||
Introduces the issues surrounding de novo assembly of complex genomes, with a particular focus on issues related to variant discovery. | Introduces the issues surrounding de novo assembly of complex genomes, with a particular focus on issues related to variant discovery. Also provides a brief overview of the results of Lander and Waterman on contig length. | ||
== Slides == | == Slides == | ||
[[Media:666.2012. | [[Media:666.2012.01_-_De_Novo_Assembly.pdf|Slides in PDF Format]] | ||
== Recommended Reading == | == Recommended Reading == | ||
Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. ''Nature Genetics'' '''44''':226-232 | Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. ''Nature Genetics'' '''44''':226-232 | ||
Lander E and Waterman M (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. ''Genomics'' '''2''':231-239 | |||
Latest revision as of 03:38, 4 December 2017
Overview
Introduces the issues surrounding de novo assembly of complex genomes, with a particular focus on issues related to variant discovery. Also provides a brief overview of the results of Lander and Waterman on contig length.
Slides
Recommended Reading
Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. Nature Genetics 44:226-232
Lander E and Waterman M (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2:231-239
