BamPileup: Difference between revisions
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Created page with '==Simple pileup tool to check the reads covering specific regions/sites ==Download== The following parameters are available. Ones with "[]" are in effect: Input Files : --b…' |
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==Simple pileup tool to check the reads covering specific regions/sites | == Simple pileup tool to check the reads covering specific regions/sites == | ||
== | == Usage == | ||
type bamPileupStat with out arguments | |||
The following parameters are available. Ones with "[]" are in effect: | The following parameters are available. Ones with "[]" are in effect: | ||
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--proper_keep [OFF] , --dup_keep [OFF] | --proper_keep [OFF] , --dup_keep [OFF] | ||
Output : --summary [OFF] , --full [OFF] , --pass [OFF] | Output : --summary [OFF] , --full [OFF] , --pass [OFF] | ||
== Download == | |||
Click [[Media:BamPileup.tar.gz | here to download]]. | |||
Latest revision as of 18:08, 28 February 2013
Simple pileup tool to check the reads covering specific regions/sites
Usage
type bamPileupStat with out arguments
The following parameters are available. Ones with "[]" are in effect:
Input Files : --bam [], --bed []
Filters : --min_mapq [0], --min_bq [0], --min_dp [0], --max_dp [-1],
--proper_keep [OFF] , --dup_keep [OFF]
Output : --summary [OFF] , --full [OFF] , --pass [OFF]
Download
Click here to download.
