RAREFY DOCUMENTATION: Difference between revisions
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==INPUT FILE FORMAT== | ==INPUT FILE FORMAT== | ||
*'''RAREFY''' takes [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html MERLIN format PED/DAT files] as input, no MAP file is needed. | *'''RAREFY''' takes [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html MERLIN format PED/DAT files] as input, no MAP file is needed. | ||
*Input files should have pedigree information, phenotype, and covariates information (if covariates are to be adjusted) saved. | |||
==SOFTWARE INTERFACE== | ==SOFTWARE INTERFACE== | ||
==EXAMPLES== | ==EXAMPLES== | ||
Revision as of 14:31, 3 February 2015
KEY FEATURES
- RAREFY is a likelihood-based method to prioritize individuals in family samples and population samples.
- RAREFY takes account familial relatedness and allows adjusting covariates.
- RAREFY is able to handle large and complex pedigrees.
INPUT FILE FORMAT
- RAREFY takes MERLIN format PED/DAT files as input, no MAP file is needed.
- Input files should have pedigree information, phenotype, and covariates information (if covariates are to be adjusted) saved.
