MaCH: Difference between revisions
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== Options == | == Options == | ||
Input Files: | Input Files: | ||
--datfile | --datfile | ||
Marker information file | Marker information file for subjects under study. | ||
--pedfile | --pedfile | ||
Pedigree file | Pedigree file for subjects under study. | ||
== FAQ == | == FAQ == | ||
Revision as of 17:28, 26 April 2010
MaCH (MArkov Chain Haplotyping) is a Hidden Markov Model (HMM) based haplotyper that reconstructs haplotypes from genotypes of unrelated individuals. Three primary utilities of MaCH are (1) to resolve haplotypes from diploid genotypes; (2) impute missing genotypes; and (3) perform disease mapping analysis.
Options
Input Files: --datfile Marker information file for subjects under study. --pedfile Pedigree file for subjects under study.
