Raremetal Incoming updates: Difference between revisions
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* [[RAREMETAL_Change_Log | RAREMETAL Change log]] | * [[RAREMETAL_Change_Log | RAREMETAL Change log]] | ||
==Finished in test version== | |||
* '''Optimization for unbalanced studies (Jingjing Yang)''' | |||
* Reduce running time when reading over 10,000s individual genotype from vcf | |||
==Incoming update== | ==Incoming update== | ||
* Take snpeff as annotation input | * Take snpeff as annotation input | ||
* When no conditional variant is available, warning is generated but not written to log file. | * When no conditional variant is available, warning is generated but not written to log file. | ||
Revision as of 12:56, 8 July 2016
Main Wiki Page
Finished in test version
- Optimization for unbalanced studies (Jingjing Yang)
- Reduce running time when reading over 10,000s individual genotype from vcf
Incoming update
- Take snpeff as annotation input
- When no conditional variant is available, warning is generated but not written to log file.
- SKAT conditional analysis misses the last 3 column names. They should be cond_statistics, cond_pvalue_davis, cond_p_value_liu.
- A seg fault: sometimes you only have very few variants but raremetal still tries to calculate GC.
- This has been fixed on CSG cluster but not in 4.13.8 release.
- enable reading from .gz annotated vcf
- add SKAT-O
- solve the numeric issue of lambda = 0 in SKAT
