Karma: Difference between revisions
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Karma is top secret. Shh! | Karma is top secret. Shh! | ||
* Download | |||
To get a bootleg copy go to [http://www.sph.umich.edu/csg/pha/karma/download/ Karma Download] | To get a bootleg copy go to [http://www.sph.umich.edu/csg/pha/karma/download/ Karma Download] | ||
* Command line | |||
* File strucutre | |||
Color space mapping needs 6 files, and base space mapping needs 5 files (only need to use 1 reference genome). | |||
Ue color space as an example, and say we use NCBI36.fa as reference genome: | |||
basespace.umfa => NCBI36.bs.umfa | |||
colorspace.umfa => NCBI36.cs.umfa | |||
colorspace.umwhr => NCBI36.cs.12.umwhr | |||
colorspace.umwhl => NCBI36.cs.12.umwhl | |||
colorspace.umwihi => NCBI36.cs.12.umwihi | |||
colorspace.umwiwp => NCBI36.cs.12.umwiwp | |||
Other links: | * Other useful links: | ||
[http://www.broadinstitute.org/files/shared/mpg/nextgen2010/nextgen_li.pdf Introduction of BWA usage] | [http://www.broadinstitute.org/files/shared/mpg/nextgen2010/nextgen_li.pdf Introduction of BWA usage] | ||
Revision as of 23:52, 23 March 2010
Karma is top secret. Shh!
- Download
To get a bootleg copy go to Karma Download
- Command line
- File strucutre
Color space mapping needs 6 files, and base space mapping needs 5 files (only need to use 1 reference genome).
Ue color space as an example, and say we use NCBI36.fa as reference genome:
basespace.umfa => NCBI36.bs.umfa colorspace.umfa => NCBI36.cs.umfa colorspace.umwhr => NCBI36.cs.12.umwhr colorspace.umwhl => NCBI36.cs.12.umwhl colorspace.umwihi => NCBI36.cs.12.umwihi colorspace.umwiwp => NCBI36.cs.12.umwiwp
- Other useful links:
