User contributions for Goncalo

15 November 2009

• 02:1002:10, 15 November 2009 diff hist +1 Main Page →Variant Calling
• 01:5201:52, 15 November 2009 diff hist +190 Abecasis Lab No edit summary
• 01:4901:49, 15 November 2009 diff hist +1 Abecasis Lab →Former Doctoral Students
• 01:4901:49, 15 November 2009 diff hist +81 Abecasis Lab No edit summary
• 01:4801:48, 15 November 2009 diff hist +10 Abecasis Lab →Current Members
• 01:4701:47, 15 November 2009 diff hist +831 N Abecasis Lab Created page with '== Current Members == === Research Faculty === Hyun Min Kang === Research Fellows === Bingshan Li === Graduate Students === Wei Chen Jun Ding Youna Hu Elizabeth Jewell Yanm…'
• 01:3601:36, 15 November 2009 diff hist +223 N Genome Analysis Wiki:About Created page with 'This wiki documents useful tools and protocols for genome analysis. It is maintained by the Abecasis Lab at the [http://www.umich.edu University of Michigan] [http://csg.sp…' current
• 01:3201:32, 15 November 2009 diff hist +116 GlfTrio →TODO
• 01:3101:31, 15 November 2009 diff hist +171 GlfSingle No edit summary
• 01:3001:30, 15 November 2009 diff hist +2,153 N GlfMultiples Created page with ''''glfMultiples''' is a GLF-based variant caller for next-generation sequencing data. It takes a set of GLF format genotype likelihood files as input and generates a [[VC…'
• 00:5300:53, 15 November 2009 diff hist +103 GLF No edit summary
• 00:5100:51, 15 November 2009 diff hist +10 GlfTrio →Filtering According to Depth and Map Quality
• 00:5100:51, 15 November 2009 diff hist +39 GlfTrio →Basic Usage Example
• 00:4800:48, 15 November 2009 diff hist +152 GlfTrio →Basic Usage Example
• 00:4500:45, 15 November 2009 diff hist 0 GlfTrio →Filtering According to Depth and Map Quality
• 00:4500:45, 15 November 2009 diff hist 0 GlfTrio →Basic Output Options
• 00:4400:44, 15 November 2009 diff hist 0 GlfTrio →X Chromosome Variant Calling
• 00:4300:43, 15 November 2009 diff hist 0 GlfTrio →Sample Labels
• 00:4300:43, 15 November 2009 diff hist −8 GlfTrio →Filtering According to Depth and Map Quality
• 00:4300:43, 15 November 2009 diff hist −8 GlfTrio →Basic Output Options
• 00:4200:42, 15 November 2009 diff hist +2,881 N GlfTrio Created page with ''''glfTrio''' is a GLF-based variant caller for next-generation sequencing data. It takes three GLF format genotype likelihood files as input and generates a VCF-form…'
• 00:0400:04, 15 November 2009 diff hist −2 Main Page →Welcome!

14 November 2009

• 19:0219:02, 14 November 2009 diff hist +177 N VCF Created page with ''''VCF''' is the Variant Calling Format. For the current specification, see [http://www.1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF format specification].'
• 19:0019:00, 14 November 2009 diff hist +2 Main Page No edit summary
• 18:5918:59, 14 November 2009 diff hist +278 Main Page No edit summary
• 18:5518:55, 14 November 2009 diff hist +14 GLF →Last Record
• 18:5418:54, 14 November 2009 diff hist +3,714 GLF No edit summary
• 18:1318:13, 14 November 2009 diff hist +962 GlfSingle No edit summary
• 18:0718:07, 14 November 2009 diff hist +556 N GLF Created page with ''''GLF''' is a format for storing marginal likelihoods for next-generation sequence data, conditional on a set of possible genotypes. === Generating GLF Files === GLF files can…'
• 17:5917:59, 14 November 2009 diff hist +448 N GlfSingle Created page with ''''glfSingle''' is a GLF-based variant caller for next-generation sequencing data. It takes a GLF format genotype likelihood file as input and generates a VCF-format …'
• 17:4417:44, 14 November 2009 diff hist +2 METAL Command Reference No edit summary
• 17:4317:43, 14 November 2009 diff hist +2,100 N METAL Command Reference Created page with '=== Describing Input Files === SEPARATOR [WHITESPACE|COMMA|BOTH|TAB] (default = WHITESPACE) COLUMNCOUNTING [STRICT|LENIENT] (default = 'STRICT') MARK…'
• 01:3901:39, 14 November 2009 diff hist +1 Main Page No edit summary
• 01:3801:38, 14 November 2009 diff hist +7 Main Page No edit summary
• 01:3701:37, 14 November 2009 diff hist +2 Main Page No edit summary
• 01:3401:34, 14 November 2009 diff hist +59 Main Page No edit summary
• 01:3201:32, 14 November 2009 diff hist +40 N File:2009.08 Group Retreat Photo.jpg Photo from Group Retreat in August 2008.

13 November 2009

• 13:5213:52, 13 November 2009 diff hist +48 Karma No edit summary
• 13:5213:52, 13 November 2009 diff hist +25 N Karma Created page with 'Karma is top secret. Shh!'
• 13:5113:51, 13 November 2009 diff hist +122 Main Page No edit summary

11 November 2009

• 02:1902:19, 11 November 2009 diff hist +3 Main Page No edit summary
• 02:1802:18, 11 November 2009 diff hist −12 Main Page No edit summary
• 02:1802:18, 11 November 2009 diff hist −503 Main Page No edit summary
• 02:1702:17, 11 November 2009 diff hist +78 Main Page No edit summary
• 02:1602:16, 11 November 2009 diff hist +497 Main Page No edit summary
• 02:1502:15, 11 November 2009 diff hist +248 Main Page No edit summary
• 01:3801:38, 11 November 2009 diff hist −31 Main Page No edit summary
• 01:3701:37, 11 November 2009 diff hist +31 Main Page No edit summary
• 01:3001:30, 11 November 2009 diff hist 0 Main Page No edit summary

10 November 2009

• 11:5211:52, 10 November 2009 diff hist −423 Main Page No edit summary