User contributions for Pjvh
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8 January 2016
- 02:5402:54, 8 January 2016 diff hist +215 Using Gotcloud on Flux →How to monitor your jobs on Flux
- 02:5302:53, 8 January 2016 diff hist +241 Using Gotcloud on Flux →How to run Gotcloud on Flux
- 02:4302:43, 8 January 2016 diff hist +973 Using Gotcloud on Flux →Running Gotcloud on Flux
- 02:3302:33, 8 January 2016 diff hist +33 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:3302:33, 8 January 2016 diff hist +1 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:3202:32, 8 January 2016 diff hist +766 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:1402:14, 8 January 2016 diff hist −33 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:1402:14, 8 January 2016 diff hist +3,382 N Using Gotcloud on Flux Created page with "__TOC__ ==Running Gotcloud on Flux== ===First, Configure GotCloud like you would anywhere else=== 1. Install GotCloud somewhere as instructed GotCloud#GotCloud_Setup_on_A..."
- 00:2500:25, 8 January 2016 diff hist +40 Talk:GotCloud No edit summary
- 00:2200:22, 8 January 2016 diff hist −1 Talk:GotCloud →Organization of the GotCloud pages on this wiki
- 00:2100:21, 8 January 2016 diff hist +51 Talk:GotCloud No edit summary
- 00:1900:19, 8 January 2016 diff hist −626 Talk:GotCloud No edit summary
- 00:1700:17, 8 January 2016 diff hist +1,287 Talk:GotCloud No edit summary
7 January 2016
- 23:4923:49, 7 January 2016 diff hist +339 Talk:GotCloud No edit summary
- 23:4223:42, 7 January 2016 diff hist +1,799 N Talk:GotCloud Created page with "==Organization of the GotCloud pages on this wiki== The main page is http://genome.sph.umich.edu/wiki/GotCloud . Setup pages: * http://genome.sph.umich.edu/wiki/GotCloud:_Bi..."
- 23:2923:29, 7 January 2016 diff hist +25 GotCloud: Binary Releases No edit summary current
- 23:2723:27, 7 January 2016 diff hist +9 GotCloud: Binary Releases →GotCloud Binary Releases
- 23:2523:25, 7 January 2016 diff hist +12 GotCloud: Binary Releases No edit summary
15 December 2015
6 November 2015
- 22:1722:17, 6 November 2015 diff hist −124 Releasing GotCloud No edit summary current
31 October 2015
- 01:5101:51, 31 October 2015 diff hist −2 VcfCooker No edit summary current
- 01:5001:50, 31 October 2015 diff hist +74 VcfCooker add download link
29 October 2015
- 03:5303:53, 29 October 2015 diff hist +8 Releasing GotCloud No edit summary
- 03:4003:40, 29 October 2015 diff hist +36 Releasing GotCloud No edit summary
- 03:3803:38, 29 October 2015 diff hist −2 Releasing GotCloud No edit summary
- 03:3403:34, 29 October 2015 diff hist −36 Releasing GotCloud No edit summary
- 03:2903:29, 29 October 2015 diff hist −2 Releasing GotCloud No edit summary
27 October 2015
- 18:1118:11, 27 October 2015 diff hist +22 BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil: grammar/usage.
- 18:0818:08, 27 October 2015 diff hist −13 m BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil: Fix broken link.
2 October 2015
- 12:5512:55, 2 October 2015 diff hist −65 Talk:SeqShop: Sequence Mapping and Assembly Practical, May 2015 remove idea as impractical because of samtools, tabix, svtoolkit current
28 September 2015
- 13:0913:09, 28 September 2015 diff hist +65 N Talk:SeqShop: Sequence Mapping and Assembly Practical, May 2015 Created page with "TODO: put `gotcloud` into the path and remove the variable `$GC`."
11 September 2015
- 16:1016:10, 11 September 2015 diff hist +33 m SAM →What Information Does SAM/BAM Have for an Alignment: turn text to link current
8 September 2015
- 18:5018:50, 8 September 2015 diff hist 0 Git FAQs →Bring in changes from a subtree's remote: It won't work if you only have the remote but not the branch. current
1 September 2015
- 18:0418:04, 1 September 2015 diff hist −18 m Git FAQs →Subtrees: Format code.
- 18:0118:01, 1 September 2015 diff hist +246 Git FAQs →Subtrees: Format instructions for using git subtrees
- 17:4317:43, 1 September 2015 diff hist −77 GotCloud →Running GotCloud Software: Remove broken links. Update pipeline status.
31 August 2015
- 14:5514:55, 31 August 2015 diff hist +7 GotCloud: Creating a New Pipeline →Command Line Parameters: fix formatting about BAM_LIST current
- 14:2814:28, 31 August 2015 diff hist 0 m GotCloud: Creating a New Pipeline →Overall Pipeline Definition: spelling
- 13:5513:55, 31 August 2015 diff hist +1 m GotCloud: Amazon matching parenthesis current
25 August 2015
- 16:3716:37, 25 August 2015 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, May 2015 →Step 1: bam --> pileup: add # to command line
- 15:5615:56, 25 August 2015 diff hist −173 SeqShop: Analysis of Structural Variation Practical, May 2015 Undo revision 13683 by Pjvh (talk) revert all changes involving `--list bam.list` current
24 August 2015
- 18:3418:34, 24 August 2015 diff hist +4 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline: split long command line
- 18:3118:31, 24 August 2015 diff hist +21 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline: add `--list bams/bam.list` to the 3rd command
- 18:2918:29, 24 August 2015 diff hist +21 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Genotyping Pipeline: add `--list bams/bam.list` to the next gotcloud command
- 18:2118:21, 24 August 2015 diff hist +1 m SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline: add missing dash
- 18:1918:19, 24 August 2015 diff hist +127 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline: tell gotcloud where bam.list is, which is now required.
19 August 2015
- 22:0622:06, 19 August 2015 diff hist +31 User:Pjvh No edit summary current
- 22:0522:05, 19 August 2015 diff hist −445 User:Pjvh Blanked the page
- 18:3518:35, 19 August 2015 diff hist +4 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Filtered VCF: since the uncompressed vcf isn't created, use zless on the compressed current
- 15:0515:05, 19 August 2015 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Download & Build GotCloud: update to gotcloud-1.17.4