User contributions for Ylwtx

29 November 2010

• 14:4214:42, 29 November 2010 diff hist +181 SplitPed →Example Commands
• 14:4014:40, 29 November 2010 diff hist +123 SplitPed No edit summary
• 14:3914:39, 29 November 2010 diff hist +140 SplitPed →Example Commands
• 14:3614:36, 29 November 2010 diff hist +781 SplitPed No edit summary
• 14:2814:28, 29 November 2010 diff hist +2,398 N SplitPed Created page with 'This page documents the splitPed program, which splits a pedigree file into smaller files with subsets of markers. == Input Files == === Required Input Files === ==== Pedigree f…'
• 12:5012:50, 29 November 2010 diff hist +660 Mach DAC No edit summary
• 08:2908:29, 29 November 2010 diff hist +437 MaCH: machX No edit summary
• 08:2708:27, 29 November 2010 diff hist +74 Thunder No edit summary
• 08:2208:22, 29 November 2010 diff hist +140 MaCH FAQ No edit summary

28 November 2010

• 21:1321:13, 28 November 2010 diff hist +4 MaCH FAQ →Why and how to perform a 2-step imputation?
• 21:1221:12, 28 November 2010 diff hist +167 N Mach DAC Created page with 'This is the MaCH Divide and Conquer page, documenting how to break the genome into smaller pieces before imputation/phasing and how to ligate after imputation/phasing.'
• 21:1021:10, 28 November 2010 diff hist +642 MaCH FAQ No edit summary
• 21:0521:05, 28 November 2010 diff hist −1 MaCH FAQ →Why and how to perform a 2-step imputation?
• 21:0421:04, 28 November 2010 diff hist +59 MaCH FAQ →Why and how to perform a 2-step imputation?

26 November 2010

• 09:4909:49, 26 November 2010 diff hist +281 MaCH: machX →Impute
• 09:4709:47, 26 November 2010 diff hist +260 MaCH: machX →Phase Your Own Data
• 09:4409:44, 26 November 2010 diff hist −11 MaCH: machX →Reference Haplotypes
• 09:4409:44, 26 November 2010 diff hist +12 MaCH: machX No edit summary
• 09:4309:43, 26 November 2010 diff hist +12 MaCH: machX No edit summary
• 09:4209:42, 26 November 2010 diff hist −1 MaCH: machX No edit summary
• 09:4109:41, 26 November 2010 diff hist 0 MaCH: machX No edit summary
• 09:4009:40, 26 November 2010 diff hist +1,018 N MaCH: machX Created page with 'This page documents how to perform X chromosome (non-pseudo-autosomal part) imputation using MaCH [http://www.sph.umich.edu/csg/yli/mach] and minimac [http://genome.sph.umich.edu…'
• 08:3408:34, 26 November 2010 diff hist 0 MaCH No edit summary current
• 08:3308:33, 26 November 2010 diff hist +42 MaCH No edit summary

24 November 2010

• 07:1707:17, 24 November 2010 diff hist +5 MaCH FAQ →How do I get reference files for an region of interest?

19 November 2010

• 16:3616:36, 19 November 2010 diff hist +33 MaCH FAQ →How long does imputation take?

21 October 2010

• 18:2218:22, 21 October 2010 diff hist +1 Haploxt →--r2Threshold or -t current
• 18:2218:22, 21 October 2010 diff hist +34 Haploxt No edit summary
• 18:2018:20, 21 October 2010 diff hist +307 Haploxt →download
• 18:1118:11, 21 October 2010 diff hist −1 Haploxt →.freq
• 18:1018:10, 21 October 2010 diff hist +516 Haploxt No edit summary
• 18:0518:05, 21 October 2010 diff hist −2,290 Haploxt No edit summary
• 13:3113:31, 21 October 2010 diff hist +369 Haploxt No edit summary
• 09:5709:57, 21 October 2010 diff hist +35 Haploxt No edit summary
• 09:5609:56, 21 October 2010 diff hist +857 Haploxt No edit summary
• 09:5209:52, 21 October 2010 diff hist +4,021 N Haploxt Created page with 'haploxt is a C/C++ software developed by [https://www.sph.umich.edu/csg/yli/ Yun Li] and [https://www.sph.umich.edu/csg/abecasis/ Goncalo Abecasis]. It calculates LD (D' and r<su…'
• 09:3409:34, 21 October 2010 diff hist +37 CalcMatch No edit summary

15 October 2010

• 16:0416:04, 15 October 2010 diff hist +12 Thunder No edit summary
• 15:5915:59, 15 October 2010 diff hist +198 Thunder No edit summary
• 15:5615:56, 15 October 2010 diff hist +60 Thunder No edit summary
• 15:5615:56, 15 October 2010 diff hist +413 Thunder No edit summary
• 15:5115:51, 15 October 2010 diff hist +246 Thunder No edit summary
• 15:4815:48, 15 October 2010 diff hist +16 Thunder No edit summary
• 15:4115:41, 15 October 2010 diff hist +1 Thunder No edit summary
• 15:4015:40, 15 October 2010 diff hist +15 Thunder No edit summary
• 15:4015:40, 15 October 2010 diff hist +177 Thunder No edit summary
• 15:2915:29, 15 October 2010 diff hist +109 Thunder No edit summary
• 15:2215:22, 15 October 2010 diff hist +348 Thunder No edit summary
• 15:1715:17, 15 October 2010 diff hist +75 Thunder No edit summary
• 13:1213:12, 15 October 2010 diff hist +112 Thunder No edit summary