User contributions for Goncalo

8 April 2011

• 07:1107:11, 8 April 2011 diff hist +613 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
• 07:0707:07, 8 April 2011 diff hist 0 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
• 07:0607:06, 8 April 2011 diff hist +74 Minimac: 1000 Genomes Imputation Cookbook →Shoud I use MaCH or minimac?

25 March 2011

• 10:3310:33, 25 March 2011 diff hist +119 METAL No edit summary current
• 09:4309:43, 25 March 2011 diff hist +2 METAL Documentation →History
• 09:4309:43, 25 March 2011 diff hist +117 METAL Documentation →History
• 07:3607:36, 25 March 2011 diff hist 0 METAL Command Reference →Genomic Control Correction of Input Statistics current
• 07:3407:34, 25 March 2011 diff hist +891 METAL GENOMICCONTROL No edit summary current

10 March 2011

• 17:5717:57, 10 March 2011 diff hist 0 Minimac →post-imputation association analysis
• 17:5517:55, 10 March 2011 diff hist −10 Minimac →binary traits
• 17:5517:55, 10 March 2011 diff hist +5 Minimac →X Chromosome Imputation
• 17:5417:54, 10 March 2011 diff hist +155 Minimac →Imputation into Phased Haplotypes
• 17:5117:51, 10 March 2011 diff hist +82 Minimac →NCBI build 36 / NCBI build 37
• 17:4717:47, 10 March 2011 diff hist +3 Minimac →Imputation
• 17:4617:46, 10 March 2011 diff hist +334 Minimac →Pre-phasing

7 February 2011

• 17:5817:58, 7 February 2011 diff hist −23 Rare variant tests →Summary of rare variant tests for sequence data

22 January 2011

• 06:0306:03, 22 January 2011 diff hist −104 Abecasis Group Awards →American Society of Human Genetics
• 05:5005:50, 22 January 2011 diff hist +104 Abecasis Group Awards →American Society of Human Genetics
• 05:4605:46, 22 January 2011 diff hist +2 Abecasis Group Awards →American Society of Human Genetics

6 January 2011

• 12:4312:43, 6 January 2011 diff hist −10 Abecasis Lab →Graduate Students
• 12:4212:42, 6 January 2011 diff hist +177 Abecasis Lab →Former Doctoral Students

2 December 2010

• 21:0521:05, 2 December 2010 diff hist +246 N Biostatistics 666: Copy Number Variation Created page with '== Overview == Introduces the analysis of copy number variation. Principles behind the detection of copy number variation with binary segmentation models and hidden markov model…' current
• 21:0321:03, 2 December 2010 diff hist +82 Biostatistics 666: Main Page →Class Notes
• 21:0221:02, 2 December 2010 diff hist +60 N File:666.Zollner.CNV.pdf Guest lecture by Sebastian Zollner on Copy Number Variation. current

1 December 2010

• 23:3923:39, 1 December 2010 diff hist 0 N File:666.2010.05.pdf No edit summary
• 23:3223:32, 1 December 2010 diff hist +721 N Biostatistics 666: Analysis of Low Pass Sequence Data Created page with '== Objective == Discussion of the challenges involved in sequencing thousands of individual genomes. Introduction to the analysis of low pass sequence data. == Lecture Notes ==…' current
• 23:3023:30, 1 December 2010 diff hist +91 Biostatistics 666: Main Page →Class Notes

29 November 2010

• 15:5715:57, 29 November 2010 diff hist +172 Biostatistics 666: Main Page →Older Lectures
• 15:5715:57, 29 November 2010 diff hist −167 Biostatistics 666: Main Page →Class Notes
• 15:5615:56, 29 November 2010 diff hist +160 Biostatistics 666: Whole Genome Sequencing →Lecture Notes
• 15:5515:55, 29 November 2010 diff hist +98 N File:666.2010.04.pdf Basic introduction to some of the issues and opportunities posed by whole genome sequence studies.
• 04:3204:32, 29 November 2010 diff hist +67 Minimac →Download
• 04:3104:31, 29 November 2010 diff hist +66 Minimac Undo revision 2568 by Cfuchsb (Talk)
• 04:3004:30, 29 November 2010 diff hist −25 Minimac Undo revision 2569 by Cfuchsb (Talk)

24 November 2010

• 19:1019:10, 24 November 2010 diff hist 0 File:666.2010.03.pdf uploaded a new version of "File:666.2010.03.pdf"

23 November 2010

• 07:2107:21, 23 November 2010 diff hist +62 N Talk:Examples moved Talk:Examples to Talk:Examples of Read Mapping with Karma and BWA current
• 07:2107:21, 23 November 2010 diff hist 0 m Talk:Examples of Read Mapping with Karma and BWA moved Talk:Examples to Talk:Examples of Read Mapping with Karma and BWA current
• 07:2107:21, 23 November 2010 diff hist +57 N Examples moved Examples to Examples of Read Mapping with Karma and BWA current
• 07:2107:21, 23 November 2010 diff hist 0 m Examples of Read Mapping with Karma and BWA moved Examples to Examples of Read Mapping with Karma and BWA
• 07:1807:18, 23 November 2010 diff hist +596 N Biostatistics 666: Genotype Imputation Created page with '== Overview == Genotype imputation is one of the most commonly used tools for the analysis of genomewide association studies. This lecture introduces the basic ideas behind geno…'
• 07:1507:15, 23 November 2010 diff hist +76 Biostatistics 666: Main Page →Class Notes
• 07:1407:14, 23 November 2010 diff hist +116 N File:666.2010.03.pdf Introduction to Genotype Imputation, describes imputation in families and later in samples of unrelated individuals.
• 04:1704:17, 23 November 2010 diff hist +4 RelativeFinder →Current Limitations and Todo List current

18 November 2010

• 03:4703:47, 18 November 2010 diff hist 0 File:666.17.pdf uploaded a new version of "File:666.17.pdf": Minor refinements to axis.

16 November 2010

• 08:5908:59, 16 November 2010 diff hist 0 File:666.2010.02.pdf uploaded a new version of "File:666.2010.02.pdf": Fixes minor errors.
• 08:5908:59, 16 November 2010 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Updated version of lecture with more detailed review of ASP analysis

12 November 2010

• 13:1913:19, 12 November 2010 diff hist +32 N User talk:Goncalo Created page with 'Is there anything to talk about?' current

11 November 2010

• 03:0803:08, 11 November 2010 diff hist +6 Biostatistics 666: Linkage Analysis in Sibling Pairs →Slides
• 03:0803:08, 11 November 2010 diff hist +665 N Biostatistics 666: Linkage Analysis in Sibling Pairs Created page with '== Outline == This lecture introduces Neil Risch's Maximum Lod Score (MLS) test for linkage and its refinement using Peter Holman's possible triangle constraint. == Slides == …'
• 03:0203:02, 11 November 2010 diff hist +222 Biostatistics 666: Main Page →Class Notes