User contributions for Goncalo

21 September 2011

• 23:4723:47, 21 September 2011 diff hist +344 Minimac Command Reference →Output Parameters
• 23:3923:39, 21 September 2011 diff hist 0 Minimac →Download
• 02:3102:31, 21 September 2011 diff hist +23 Polymutt: a tool for calling polymorphism and de novo mutations in families for sequencing data No edit summary

19 September 2011

• 08:1208:12, 19 September 2011 diff hist +10 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
• 08:1108:11, 19 September 2011 diff hist +215 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
• 08:1008:10, 19 September 2011 diff hist +37 Minimac: 1000 Genomes Imputation Cookbook →Further Time Savings
• 08:0908:09, 19 September 2011 diff hist −1 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
• 08:0808:08, 19 September 2011 diff hist +133 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
• 07:5007:50, 19 September 2011 diff hist +289 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
• 07:4907:49, 19 September 2011 diff hist +543 Minimac Command Reference →Reference Haplotype Set
• 07:4807:48, 19 September 2011 diff hist −543 Minimac Command Reference →Target Haplotype Set
• 07:4407:44, 19 September 2011 diff hist +5 Minimac Command Reference →Target Haplotype Set
• 07:4407:44, 19 September 2011 diff hist +6 Minimac Command Reference →Target Haplotype Set
• 07:4307:43, 19 September 2011 diff hist +532 Minimac Command Reference →Target Haplotype Set
• 04:2704:27, 19 September 2011 diff hist −2 Minimac: 1000 Genomes Imputation Cookbook →Questions and Comments
• 04:1304:13, 19 September 2011 diff hist −31 File:666.03.pdf No edit summary
• 04:1204:12, 19 September 2011 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf": →Minor updates to the lecture - added recommended reading list, synchronized content with 2011 lecture series

12 September 2011

• 07:3307:33, 12 September 2011 diff hist +348 Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium →Slides current
• 07:3207:32, 12 September 2011 diff hist +48 Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium →Slides
• 07:3107:31, 12 September 2011 diff hist +216 Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium →Objective
• 07:2907:29, 12 September 2011 diff hist +289 N Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium Created page with '== Objective == This lecture does double duty, introducing course objectives and the concept of Hardy Weinberg Equilibrium. It combines topics previously covered in two separat…'
• 07:2707:27, 12 September 2011 diff hist +150 Biostatistics 666: Main Page →Older Lectures
• 07:2707:27, 12 September 2011 diff hist −43 Biostatistics 666: Main Page →Class Notes
• 07:2607:26, 12 September 2011 diff hist +75 N File:2011.666.01.pdf Course Introduction and Hardy Weinberg Lecture Combined into A Single Class
• 05:4805:48, 12 September 2011 diff hist −167 Biostatistics 666: Main Page →Problem Set Solutions
• 05:4505:45, 12 September 2011 diff hist +12 Biostatistics 666: Main Page →Course History
• 05:4405:44, 12 September 2011 diff hist −24 Biostatistics 666: Main Page →Office Hours
• 05:4205:42, 12 September 2011 diff hist −1 Biostatistics 666: Main Page →Scheduling
• 05:4205:42, 12 September 2011 diff hist +65 Biostatistics 666: Main Page →Scheduling
• 05:4105:41, 12 September 2011 diff hist +61 Biostatistics 666: Main Page →Target Audience

7 September 2011

• 06:5006:50, 7 September 2011 diff hist −6 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
• 06:4206:42, 7 September 2011 diff hist −4 Tutorial: Low Pass Sequence Analysis →Browsing Alignment Results
• 06:4206:42, 7 September 2011 diff hist −4 Tutorial: Low Pass Sequence Analysis →Indexing the BAM file
• 06:4106:41, 7 September 2011 diff hist +5 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
• 06:3806:38, 7 September 2011 diff hist −4 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
• 06:3606:36, 7 September 2011 diff hist +27 Tutorial: Low Pass Sequence Analysis →Browsing Alignment Results
• 06:2906:29, 7 September 2011 diff hist +5 Tutorial: Low Pass Sequence Analysis →Browsing Alignment Results
• 06:2806:28, 7 September 2011 diff hist −1 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
• 05:4705:47, 7 September 2011 diff hist −1 Tutorial: Low Pass Sequence Analysis →Initial set of variant calls
• 05:3605:36, 7 September 2011 diff hist +7 Tutorial: Low Pass Sequence Analysis →Initial set of variant calls
• 05:3505:35, 7 September 2011 diff hist −5 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
• 05:3505:35, 7 September 2011 diff hist −4 Tutorial: Low Pass Sequence Analysis →Indexing and Annotating the BAM file
• 05:1805:18, 7 September 2011 diff hist +1,593 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
• 04:5504:55, 7 September 2011 diff hist +1,940 Tutorial: Low Pass Sequence Analysis →Initial set of variant calls
• 04:3704:37, 7 September 2011 diff hist +1 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
• 04:3504:35, 7 September 2011 diff hist −3 Tutorial: Low Pass Sequence Analysis →Sequence Analysis Workshop
• 04:3204:32, 7 September 2011 diff hist +4,561 N Tutorial: Low Pass Sequence Analysis Created page with '= Sequence Analysis Workshop = In this workshop, we will illustrate some of the essential steps in the analysis of next generation sequence data. As part of the process, you wil…'
• 04:2704:27, 7 September 2011 diff hist +42 Short Workshops No edit summary

2 September 2011

• 06:1406:14, 2 September 2011 diff hist 0 Minimac →Download

23 August 2011

• 11:1911:19, 23 August 2011 diff hist +47 Exome Chip Design →Ancestry Informative Markers