User contributions for Goncalo

26 November 2012

• 09:3709:37, 26 November 2012 diff hist +13 N File:666.2012.01.pdf Version zero!
• 09:3709:37, 26 November 2012 diff hist +89 Biostatistics 666: Main Page →Class Notes

21 November 2012

• 02:0802:08, 21 November 2012 diff hist 0 Biostatistics 666: Main Page →Class Notes
• 02:0702:07, 21 November 2012 diff hist 0 File:666.2011.02.pdf uploaded a new version of "File:666.2011.02.pdf": →Minor update; added empirical distribution of read pair distances from QPLOT current
• 02:0602:06, 21 November 2012 diff hist 0 File:666.2010.05.pdf uploaded a new version of "File:666.2010.05.pdf": →Minor typo fixes current

16 November 2012

• 21:0921:09, 16 November 2012 diff hist −14 RAREMETALWORKER Minor typos fixed

14 November 2012

• 00:3200:32, 14 November 2012 diff hist 0 File:666.2010.04.pdf uploaded a new version of "File:666.2010.04.pdf": Minor updates, adding Ion Torrent as a sequencing technology and adding some specific numbers to illustrate the scale of genetic variation that can be reached by sequencing. current

12 November 2012

• 06:3306:33, 12 November 2012 diff hist 0 File:666.2010.03.pdf uploaded a new version of "File:666.2010.03.pdf": Adds a summary slide. current
• 06:2606:26, 12 November 2012 diff hist 0 Biostatistics 666: Main Page →Class Notes

31 October 2012

• 03:3303:33, 31 October 2012 diff hist 0 File:666.17.pdf uploaded a new version of "File:666.17.pdf" current
• 03:3303:33, 31 October 2012 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Minor typo fix. current

29 October 2012

• 03:0703:07, 29 October 2012 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Fixed look of slides with equations.
• 02:0802:08, 29 October 2012 diff hist −3 Biostatistics 666: Linkage Analysis in Sibling Pairs →Recommended Reading

22 October 2012

• 05:2405:24, 22 October 2012 diff hist 0 File:666.2010.02.pdf uploaded a new version of "File:666.2010.02.pdf": Updated lecture to include example from an actual affected sibling pair study. The lecture is still far too long. current

3 October 2012

• 06:1606:16, 3 October 2012 diff hist 0 File:666.12.pdf uploaded a new version of "File:666.12.pdf": Minor edits. current

26 September 2012

• 02:2502:25, 26 September 2012 diff hist 0 File:666.10.pdf uploaded a new version of "File:666.10.pdf": Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters. current

18 September 2012

• 23:0523:05, 18 September 2012 diff hist 0 File:666.06.pdf uploaded a new version of "File:666.06.pdf" current

10 September 2012

• 08:4008:40, 10 September 2012 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf": Minor updates. current

5 September 2012

• 02:1502:15, 5 September 2012 diff hist 0 File:2011.666.01.pdf uploaded a new version of "File:2011.666.01.pdf": Yet more minor edits, this time listing potential group projects. current
• 02:0702:07, 5 September 2012 diff hist 0 File:2011.666.01.pdf uploaded a new version of "File:2011.666.01.pdf": Minor update for 2012, adding more detail to HWE discussion, link to online class notes, and potential discussion of grading scheme
• 02:0202:02, 5 September 2012 diff hist 0 File:2011.666.01.pdf uploaded a new version of "File:2011.666.01.pdf"
• 01:1701:17, 5 September 2012 diff hist +46 Biostatistics 666: Main Page →Course History
• 01:1601:16, 5 September 2012 diff hist +103 Biostatistics 666: Main Page →Course History
• 01:1201:12, 5 September 2012 diff hist +116 Biostatistics 666: Main Page →Standards of Academic Conduct
• 01:1101:11, 5 September 2012 diff hist +12 Biostatistics 666: Main Page →Course History
• 01:1101:11, 5 September 2012 diff hist −16 Biostatistics 666: Main Page →Office Hours
• 01:1001:10, 5 September 2012 diff hist −169 Biostatistics 666: Main Page →Scheduling
• 01:0801:08, 5 September 2012 diff hist +19 Biostatistics 666: Main Page →Objective
• 01:0701:07, 5 September 2012 diff hist −167 Biostatistics 666: Main Page →Problem Set Solutions

8 June 2012

• 10:4610:46, 8 June 2012 diff hist −18 Minimac →Running Minimac

1 June 2012

• 15:5515:55, 1 June 2012 diff hist +230 Nm User talk:Michael Welcome! current
• 15:5515:55, 1 June 2012 diff hist +318 Nm User:Michael Creating user page with biography of new user. current
• 15:5315:53, 1 June 2012 diff hist +333 Karma No edit summary

13 April 2012

• 10:3410:34, 13 April 2012 diff hist +16 Abecasis Group Awards →Goncalo's Awards
• 10:3310:33, 13 April 2012 diff hist +131 Abecasis Group Awards →Goncalo's Awards

5 April 2012

• 15:0215:02, 5 April 2012 diff hist +80 Short Workshops No edit summary

8 February 2012

• 05:2705:27, 8 February 2012 diff hist +1 TrioCaller →Converting Alignments to BAM format
• 05:2405:24, 8 February 2012 diff hist +6 TrioCaller →Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
• 05:2305:23, 8 February 2012 diff hist −92 TrioCaller →Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
• 05:2205:22, 8 February 2012 diff hist +102 TrioCaller →Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
• 05:2005:20, 8 February 2012 diff hist +135 TrioCaller →Alternative way to call variants
• 05:1805:18, 8 February 2012 diff hist −8 TrioCaller →Initial set of variant calls
• 05:1605:16, 8 February 2012 diff hist −405 TrioCaller →Mapping Reads to The Genome
• 05:1105:11, 8 February 2012 diff hist +91 TrioCaller →Building an Index for Short Read Alignment
• 05:0905:09, 8 February 2012 diff hist −61 TrioCaller →Required Software
• 05:0205:02, 8 February 2012 diff hist +9 TrioCaller →Download with example datasets

23 January 2012

• 07:4207:42, 23 January 2012 diff hist +380 N ThunderVCF Created page with 'This a modified version of MACH, designed for the accurate genotyping of low pass sequence data from unrelated individuals and included in the UMAKE download. The tool requi…' current
• 07:3707:37, 23 January 2012 diff hist +287 Tutorial: Low Pass Sequence Analysis →Example Dataset
• 07:3207:32, 23 January 2012 diff hist 0 Tutorial: Low Pass Sequence Analysis →Example Dataset

20 January 2012

• 17:5617:56, 20 January 2012 diff hist +523 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome