User contributions for Goncalo

28 October 2013

• 13:3413:34, 28 October 2013 diff hist +345 N 830 - MaqIndex::CompareToIndex() Created page with "<source lang="cpp"> int MaqIndex::CompareToIndex(String & sequence, unsigned int offset, unsigned int index) { index = sortedPositions[index]; for (unsigned int i = 0; i <..."
• 13:3313:33, 28 October 2013 diff hist +137 Biostatistics 830 - Code Snippets →Code Snippets
• 13:2913:29, 28 October 2013 diff hist +2,285 N 830 - BasicMapper::main() Created page with "<source lang="cpp"> int main(int argc, char ** argv) { // Record start time for this run time_t start = time(NULL); // This function summarizes available options and proc..." current
• 13:2813:28, 28 October 2013 diff hist +266 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
• 13:2613:26, 28 October 2013 diff hist +54 Biostatistics 830: Main Page →Required Reading

25 October 2013

• 12:4512:45, 25 October 2013 diff hist +220 Abecasis Lab →Former Doctoral Students

14 October 2013

• 14:4814:48, 14 October 2013 diff hist +95 RAREMETAL Documentation →Useful Wiki Pages

11 October 2013

• 05:1105:11, 11 October 2013 diff hist +93 Biostatistics 830: Main Page →Class Worksheets
• 05:1005:10, 11 October 2013 diff hist 0 N File:Question Sheet - Li et al (2008) Genome Research.pdf No edit summary current

3 October 2013

• 11:1311:13, 3 October 2013 diff hist +53 N RAREMETAL-SOFTWARE Goncalo moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis current
• 11:1311:13, 3 October 2013 diff hist 0 m Rare Variant Analysis and Meta-Analysis Goncalo moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis current

2 October 2013

• 16:1616:16, 2 October 2013 diff hist 0 830 - Haplotyper::ImputeGenotypes() (edge) No edit summary current
• 16:1516:15, 2 October 2013 diff hist 0 830 - Haplotyper::ImputeGenotypes() (internal) No edit summary current
• 16:0316:03, 2 October 2013 diff hist 0 830 - Haplotyper::SampleOneHaplotype() No edit summary current
• 15:5515:55, 2 October 2013 diff hist −1 830 - Haplotyper::SummarizeOptions() No edit summary current
• 15:0615:06, 2 October 2013 diff hist +574 830 - MINIMAC::main() No edit summary current
• 14:5714:57, 2 October 2013 diff hist +421 830 - MINIMAC::main() No edit summary
• 14:5214:52, 2 October 2013 diff hist −1 830 - MINIMAC::main() No edit summary
• 14:5214:52, 2 October 2013 diff hist +11,013 N 830 - MINIMAC::main() Created page with "</source lang="cpp"> int main(int argc, char ** argv) { time_t start = time(NULL); printf("MiniMac - Imputation into phased haplotypes\n" "(c) 2010-2011 Goncalo..."
• 14:5114:51, 2 October 2013 diff hist +27 Biostatistics 830 - Code Snippets →Code Snippets
• 14:3114:31, 2 October 2013 diff hist +15 Biostatistics 830 - Code Snippets →Code Snippets
• 14:3114:31, 2 October 2013 diff hist +75 N 830 - Haplotyper::ScoreLeftConditional smart() Goncalo moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated): Consistency. current
• 14:3114:31, 2 October 2013 diff hist 0 m 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) Goncalo moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated): Consistency. current
• 14:2914:29, 2 October 2013 diff hist +215 830 - Haplotyper::ImputeGenotypes() (internal) No edit summary
• 14:2814:28, 2 October 2013 diff hist +645 N 830 - Haplotyper::ImputeGenotypes() (internal) Created page with "void Haplotyper::ImputeGenotypes(float * matrix1, float * matrix2, int marker) { posterior[0][marker] = posterior[1][marker] = posterior[2][marker] = 0.0; for (int i..."
• 14:2614:26, 2 October 2013 diff hist +673 N 830 - Haplotyper::ImputeGenotypes() (edge) Created page with "<source lang="cpp"> void Haplotyper::ImputeGenotypes(float * matrix, int marker) { posterior[0][marker] = posterior[1][marker] = posterior[2][marker] = 0.0; for (in..."
• 14:2514:25, 2 October 2013 diff hist +100 Biostatistics 830 - Code Snippets →Code Snippets
• 14:1914:19, 2 October 2013 diff hist −498 830 - Haplotyper::ImputeGenotypes() No edit summary current
• 14:1614:16, 2 October 2013 diff hist −1 830 - Haplotyper::SampleOneHaplotype() No edit summary
• 14:1514:15, 2 October 2013 diff hist +198 830 - Haplotyper::SampleOneHaplotype() No edit summary
• 14:1414:14, 2 October 2013 diff hist +316 N 830 - Haplotyper::SampleOneHaplotype() Created page with "<source lang="cpp"> float Haplotyper::SampleOneHaplotype(float * vector, double first, double & second, float & choice) { for (second = 0; second < states; second++) ..."
• 14:1414:14, 2 October 2013 diff hist +44 Biostatistics 830 - Code Snippets →Code Snippets
• 14:1314:13, 2 October 2013 diff hist +2 830 - Haplotyper::SummarizeOptions() No edit summary
• 14:1314:13, 2 October 2013 diff hist +1,150 N 830 - Haplotyper::SummarizeOptions() Created page with "<code lang="cpp"> float Haplotyper::SummarizeOptions(float * vector, float ** left, float ** right, float theta, int first, int second) { right[0][0] = (1. - theta) * (..."
• 14:1214:12, 2 October 2013 diff hist +42 Biostatistics 830 - Code Snippets →Code Snippets
• 14:1114:11, 2 October 2013 diff hist +30 830 - Haplotyper::SampleChromosomes() No edit summary current
• 14:1114:11, 2 October 2013 diff hist +1,350 N 830 - Haplotyper::SampleChromosomes() Created page with " void Haplotyper::SampleChromosomes(Random * rand) { RewindMemoryPool(); RetrieveMemoryBlock(markers - 1); int first = 0, second = 0; SampleHaplotypes(leftMat..."
• 14:1014:10, 2 October 2013 diff hist +9 830 - Haplotyper::SampleHaplotypes() No edit summary current
• 14:0814:08, 2 October 2013 diff hist −589 830 - Haplotyper::SampleHaplotypes() No edit summary
• 14:0814:08, 2 October 2013 diff hist +43 Biostatistics 830 - Code Snippets →Code Snippets
• 14:0614:06, 2 October 2013 diff hist +4 830 - Haplotyper::SampleHaplotypes() No edit summary
• 14:0514:05, 2 October 2013 diff hist +1,364 N 830 - Haplotyper::SampleHaplotypes() Created page with "<source lang="cpp"> void Haplotyper::SampleChromosomes(Random * rand) { RewindMemoryPool(); RetrieveMemoryBlock(markers - 1); int first = 0, second = 0; Sampl..."
• 14:0514:05, 2 October 2013 diff hist +42 Biostatistics 830 - Code Snippets →Code Snippets
• 13:3013:30, 2 October 2013 diff hist +1 830 - Haplotyper::ScoreLeftConditional() No edit summary current
• 13:2713:27, 2 October 2013 diff hist −376 830 - Haplotyper::ScoreLeftConditional() No edit summary
• 13:2613:26, 2 October 2013 diff hist +966 N 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) Created page with "<source lang="cpp"> // This version of the ScoreLeftConditional() function deals with sites // where no genotypes are observed a little more efficiently. // void Haplotyper:..."
• 13:2513:25, 2 October 2013 diff hist +52 Biostatistics 830 - Code Snippets →Code Snippets

27 September 2013

• 02:0302:03, 27 September 2013 diff hist −16 Abecasis Lab →Staff
• 01:3001:30, 27 September 2013 diff hist 0 Abecasis Lab →Former Research Fellows

25 September 2013

• 15:0115:01, 25 September 2013 diff hist +1,257 N 830 - MarkovModel::CountErrorsAndRecombinants() Created page with "<source lang="cpp"> void MarkovModel::CountErrorsAndRecombinants(char * observed, char ** haplotypes, float ** freq) { float * swap; float * vector = new float [state..." current