User contributions for Pjvh

25 August 2015

• 16:3716:37, 25 August 2015 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, May 2015 →Step 1: bam --> pileup: add # to command line
• 15:5615:56, 25 August 2015 diff hist −173 SeqShop: Analysis of Structural Variation Practical, May 2015 Undo revision 13683 by Pjvh (talk) revert all changes involving `--list bam.list` current

24 August 2015

• 18:3418:34, 24 August 2015 diff hist +4 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline: split long command line
• 18:3118:31, 24 August 2015 diff hist +21 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline: add `--list bams/bam.list` to the 3rd command
• 18:2918:29, 24 August 2015 diff hist +21 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Genotyping Pipeline: add `--list bams/bam.list` to the next gotcloud command
• 18:2118:21, 24 August 2015 diff hist +1 m SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline: add missing dash
• 18:1918:19, 24 August 2015 diff hist +127 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline: tell gotcloud where bam.list is, which is now required.

19 August 2015

• 22:0622:06, 19 August 2015 diff hist +31 User:Pjvh No edit summary current
• 22:0522:05, 19 August 2015 diff hist −445 User:Pjvh Blanked the page
• 18:3518:35, 19 August 2015 diff hist +4 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Filtered VCF: since the uncompressed vcf isn't created, use zless on the compressed current
• 15:0515:05, 19 August 2015 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Download & Build GotCloud: update to gotcloud-1.17.4