830 - MarkovModel::Transpose()
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void MarkovModel::Transpose(float * from, float * to, double r)
{
if (r == 0)
for (int i = 0; i < states; i++)
to[i] = from[i];
else
{
double flipRate = r * empiricalFlipRate;
double sum = 0.0;
for (int i = 0; i < states; i++)
sum += from[i];
sum *= r * (1.0 - empiricalFlipRate) / states;
double complement = 1. - r;
// avoid underflows
if (sum < 1e-10)
{
sum *= 1e15;
flipRate *= 1e15;
complement *= 1e15;
}
// printf("r = %g, SUM = %g, COMPLEMENT = %g\n", r, sum, complement);
for (int i = 0; i < states; i++)
to[i] = from[i] * complement + from[i^1] * flipRate + sum;
}
}