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Jump to navigationJump to searchAn example of using libcsg (view source)
Revision as of 00:33, 15 January 2010
, 00:33, 15 January 2010no edit summary
tokens.ReplaceTokens(buffer);
tokens.ReplaceTokens(buffer);
if (buffer.Length() > 0 && tokens.Length() != 3)
if (buffer.Length() > 0) continue;
if (tokens.Length() != 3)
{
{
printf("Expect 3 words per line but the line beginning with \"%.10s\" looks different ...", (const char *) buffer);
printf("Expect 3 words per line but the line beginning with \"%.10s\" looks different ...", (const char *) buffer);
The following parameters are in effect:<br> Haplotype File : INPUT.txt (-hname)<br> From Position : 1 (-f9999)<br> To Position : 3 (-t9999)
The following parameters are in effect:<br> Haplotype File : INPUT.txt (-hname)<br> From Position : 1 (-f9999)<br> To Position : 3 (-t9999)
Haplotype Counts<br>GGT 1<br>GAC 9<br>60 1<br>Haplotypes that match the first one<br>WTCCC66062->WTCCC66062 (3)<br>WTCCC66062->WTCCC66062 (4)<br>WTCCC66063->WTCCC66063 (5)<br>WTCCC66063->WTCCC66063 (6)<br>WTCCC66064->WTCCC66064 (7)<br>WTCCC66064->WTCCC66064 (8)<br>WTCCC66065->WTCCC66065 (9)<br>WTCCC66065->WTCCC66065 (10)<br><br>
Haplotype Counts<br>GGT 1<br>GAC 9<br>Haplotypes that match the first one<br>WTCCC66062->WTCCC66062 (3)<br>WTCCC66062->WTCCC66062 (4)<br>WTCCC66063->WTCCC66063 (5)<br>WTCCC66063->WTCCC66063 (6)<br>WTCCC66064->WTCCC66064 (7)<br>WTCCC66064->WTCCC66064 (8)<br>WTCCC66065->WTCCC66065 (9)<br>WTCCC66065->WTCCC66065 (10)<br><br>
*To read a file, use IFILE class, which is wrapper for read/write file. A particular useful thing is that it handle gzipped file transparently. Important functions are: ifopen(), ifclose().<br>
*To read a file, use IFILE class, which is wrapper for read/write file. A particular useful thing is that it handle gzipped file transparently. Important functions are: ifopen(), ifclose().<br>
