Difference between revisions of "BamPileup"
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| − | ==Simple pileup tool to check the reads covering specific regions/sites | + | == Simple pileup tool to check the reads covering specific regions/sites == |
| − | == | + | == Usage == |
| + | |||
| + | type bamPileupStat with out arguments | ||
The following parameters are available. Ones with "[]" are in effect: | The following parameters are available. Ones with "[]" are in effect: | ||
| Line 7: | Line 9: | ||
--proper_keep [OFF] , --dup_keep [OFF] | --proper_keep [OFF] , --dup_keep [OFF] | ||
Output : --summary [OFF] , --full [OFF] , --pass [OFF] | Output : --summary [OFF] , --full [OFF] , --pass [OFF] | ||
| − | + | == Download == | |
| − | + | Click [[Media:BamPileup.tar.gz | here to download]]. | |
| − | |||
| − | |||
Latest revision as of 18:08, 28 February 2013
Simple pileup tool to check the reads covering specific regions/sites
Usage
type bamPileupStat with out arguments
The following parameters are available. Ones with "[]" are in effect:
Input Files : --bam [], --bed []
Filters : --min_mapq [0], --min_bq [0], --min_dp [0], --max_dp [-1],
--proper_keep [OFF] , --dup_keep [OFF]
Output : --summary [OFF] , --full [OFF] , --pass [OFF]
Download
Click here to download.
