Difference between revisions of "BamPileup"
From Genome Analysis Wiki
Jump to navigationJump to search| Line 1: | Line 1: | ||
| − | ==Simple pileup tool to check the reads covering specific regions/sites | + | == Simple pileup tool to check the reads covering specific regions/sites |
== Usage == | == Usage == | ||
| + | |||
| + | type bamPileupStat with out arguments | ||
The following parameters are available. Ones with "[]" are in effect: | The following parameters are available. Ones with "[]" are in effect: | ||
Revision as of 18:08, 28 February 2013
== Simple pileup tool to check the reads covering specific regions/sites
Usage
type bamPileupStat with out arguments
The following parameters are available. Ones with "[]" are in effect:
Input Files : --bam [], --bed []
Filters : --min_mapq [0], --min_bq [0], --min_dp [0], --max_dp [-1],
--proper_keep [OFF] , --dup_keep [OFF]
Output : --summary [OFF] , --full [OFF] , --pass [OFF]
Download
Click here to download.
