BamPileup
From Genome Analysis Wiki
Jump to navigationJump to search== Simple pileup tool to check the reads covering specific regions/sites
Usage
type bamPileupStat with out arguments
The following parameters are available. Ones with "[]" are in effect: Input Files : --bam [], --bed [] Filters : --min_mapq [0], --min_bq [0], --min_dp [0], --max_dp [-1], --proper_keep [OFF] , --dup_keep [OFF] Output : --summary [OFF] , --full [OFF] , --pass [OFF]
Download
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